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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032675
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 2134 results. Now displaying 15 of 43 with 50 rows per page. This search has taken 7.076s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0478120.1
n.a. PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum] gi|502157974|ref|XP_004510977.1| chr3 5510240 5511987 +
3 domain predictions
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Lj3g3v0718370.1
n.a. PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Cicer arietinum] gi|502146836|ref|XP_004506629.1| chr3 7837883 7839564 -
2 domain predictions
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Lj3g3v0740480.1
n.a. PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum] gi|502155881|ref|XP_004510225.1| chr3 8461698 8468097 +
3 domain predictions
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Lj3g3v0740480.2
n.a. PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum] gi|502155881|ref|XP_004510225.1| chr3 8461698 8469009 +
3 domain predictions
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Lj3g3v0740490.2
n.a. PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum] gi|502155881|ref|XP_004510225.1| chr3 8470026 8474354 +
3 domain predictions
 –
Lj3g3v0742520.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At3g14710-like [Cicer arietinum] gi|502087927|ref|XP_004488684.1| chr3 8494637 8497616 -
2 domain predictions
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Lj3g3v0744630.1
n.a. TMV resistance protein N [Medicago truncatula] gi|357487985|ref|XP_003614280.1| chr3 8535661 8537123 +
3 domain predictions
 –
Lj3g3v0744690.2
n.a. PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum] gi|502155881|ref|XP_004510225.1| chr3 8558012 8563066 -
3 domain predictions
 –
Lj3g3v0948330.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357436695|ref|XP_003588623.1| chr3 11667085 11668417 +
3 domain predictions
 –
Lj3g3v0999850.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230-like [Glycine max] gi|356528726|ref|XP_003532950.1| chr3 13340877 13345645 +
3 domain predictions
 –
Lj3g3v0999850.2
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230-like [Glycine max] gi|356555150|ref|XP_003545899.1| chr3 13340877 13345645 +
3 domain predictions
 –
Lj3g3v1010950.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Cicer arietinum] gi|502143751|ref|XP_004505452.1| chr3 13410420 13414202 +
2 domain predictions
 –
Lj3g3v1011000.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357486867|ref|XP_003613721.1| chr3 13434131 13436306 +
3 domain predictions
 –
Lj3g3v1048920.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr3 13854639 13878653 +
3 domain predictions
 –
Lj3g3v1048920.2
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr3 13854639 13890166 +
3 domain predictions
 –
Lj3g3v1048920.3
n.a. TMV resistance protein N [Medicago truncatula] gi|357509247|ref|XP_003624912.1| chr3 13855063 13877954 +
3 domain predictions
 –
Lj3g3v1064880.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430-like [Cicer arietinum] gi|502164784|ref|XP_004513262.1| chr3 14387389 14396170 -
3 domain predictions
 –
Lj3g3v1101570.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356545124|ref|XP_003540995.1| chr3 14669025 14672363 +
3 domain predictions
 –
Lj3g3v1204560.1
n.a. PREDICTED: leucine-rich repeat-containing protein 9-like isoform X1 [Cicer arietinum] gi|502083492|ref|XP_004487476.1| chr3 15892973 15896032 +
3 domain predictions
 –
Lj3g3v1239980.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542792|ref|XP_003539849.1| chr3 16187174 16191539 -
3 domain predictions
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Lj3g3v1261130.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] gi|356542042|ref|XP_003539480.1| chr3 16271690 16275645 -
3 domain predictions
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Lj3g3v1379450.1
n.a. PREDICTED: probable WRKY transcription factor 19-like [Glycine max] gi|356506545|ref|XP_003522040.1| chr3 17675585 17678681 -
3 domain predictions
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Lj3g3v1381500.1
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468519|ref|XP_003604544.1| chr3 17691002 17695459 -
3 domain predictions
 –
Lj3g3v1381500.2
n.a. Tir-nbs-lrr resistance protein [Medicago truncatula] gi|357468519|ref|XP_003604544.1| chr3 17691002 17695459 -
3 domain predictions
 –
Lj3g3v1381520.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Cicer arietinum] gi|502119158|ref|XP_004496523.1| chr3 17700086 17703769 -
3 domain predictions
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Lj3g3v1393590.1
n.a. PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] gi|356506506|ref|XP_003522022.1| chr3 17752088 17756745 -
2 domain predictions
 –
Lj3g3v1408590.1
n.a. PREDICTED: probable disease resistance protein At5g66900-like [Cicer arietinum] gi|502152977|ref|XP_004509177.1| chr3 18198740 18203620 -
2 domain predictions
 –
Lj3g3v1528030.1
n.a. Disease-resistance protein [Medicago truncatula] gi|357452821|ref|XP_003596687.1| chr3 19594242 19595807 +
3 domain predictions
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Lj3g3v1556600.1
n.a. Disease-resistance protein [Medicago truncatula] gi|357452821|ref|XP_003596687.1| chr3 19840722 19843392 -
3 domain predictions
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Lj3g3v1567740.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr3 19883317 19903928 +
3 domain predictions
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Lj3g3v1567740.2
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr3 19890781 19903928 +
3 domain predictions
 –
Lj3g3v1567740.3
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506581|ref|XP_003522058.1| chr3 19894323 19903928 +
3 domain predictions
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Lj3g3v1567750.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356506778|ref|XP_003522153.1| chr3 19899865 19903411 +
2 domain predictions
 –
Lj3g3v1663470.1
n.a. PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] gi|356527933|ref|XP_003532560.1| chr3 21304239 21304529 -
2 domain predictions
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Lj3g3v1716740.1
n.a. DNA-damage-repair/toleration protein DRT100-like precursor [Glycine max] gi|359806061|ref|NP_001240925.1| chr3 21676267 21677935 -
3 domain predictions
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Lj3g3v1834240.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Cicer arietinum] gi|502143751|ref|XP_004505452.1| chr3 23453760 23455035 -
2 domain predictions
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Lj3g3v1844260.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356560721|ref|XP_003548637.1| chr3 23567858 23573568 +
3 domain predictions
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Lj3g3v1844270.1
n.a. n.a. chr3 23570938 23575193 -
3 domain predictions
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Lj3g3v1876100.1
n.a. Disease resistance protein RPM1 [Medicago truncatula] gi|357515045|ref|XP_003627811.1| chr3 24114776 24122946 +
3 domain predictions
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Lj3g3v1876170.1
n.a. n.a. chr3 24137810 24146608 -
3 domain predictions
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Lj3g3v1933090.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1-like [Cicer arietinum] gi|502152677|ref|XP_004509039.1| chr3 24933513 24937680 +
3 domain predictions
 –
Lj3g3v2172690.2
n.a. PREDICTED: internalin-A-like isoform X1 [Cicer arietinum] gi|502147905|ref|XP_004506962.1| chr3 26998491 27006934 -
2 domain predictions
 –
Lj3g3v2387590.1
n.a. PREDICTED: F-box/LRR-repeat protein 12-like isoform X1 [Cicer arietinum] gi|502156988|ref|XP_004510720.1| chr3 29699906 29701036 +
2 domain predictions
 –
Lj3g3v2442070.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max] gi|356544283|ref|XP_003540583.1| chr3 30192898 30200838 +
2 domain predictions
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Lj3g3v2532280.1
n.a. PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] gi|356504209|ref|XP_003520891.1| chr3 31099681 31100442 +
3 domain predictions
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Lj3g3v2532290.1
n.a. tyrosine-sulfated glycopeptide receptor 1-like precursor [Glycine max] gi|358248614|ref|NP_001239911.1| chr3 31100718 31103526 +
3 domain predictions
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Lj3g3v2664410.2
n.a. PREDICTED: TMV resistance protein N-like [Cicer arietinum] gi|502156468|ref|XP_004510489.1| chr3 32515847 32519412 -
3 domain predictions
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Lj3g3v2665420.1
n.a. Nbs-lrr resistance protein [Medicago truncatula] gi|357513731|ref|XP_003627154.1| chr3 32525785 32531307 +
3 domain predictions
 –
Lj3g3v2665430.1
n.a. Nbs-lrr resistance protein [Medicago truncatula] gi|357513731|ref|XP_003627154.1| chr3 32531498 32543438 +
3 domain predictions
 –
Lj3g3v2666470.1
n.a. Nbs-lrr resistance protein [Medicago truncatula] gi|357513731|ref|XP_003627154.1| chr3 32545590 32551665 +
3 domain predictions
 –