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Lj1g3v2682530.1

Overview

Field Value
Gene ID Lj1g3v2682530
Transcript ID Lj1g3v2682530.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd00046
1 124 124 1.24E-17 –
PANTHER
PTHR10799:SF577
1 423 423 0
IPR031056
SMART
SM00487
1 150 150 2.00E-08
IPR014001
PANTHER
PTHR10799
1 423 423 0 –
ProSiteProfiles
PS51192
1 142 142 20.839
IPR014001
SUPERFAMILY
SSF52540
2 195 194 1.69E-45
IPR027417
Gene3D
G3DSA:3.40.50.300
9 137 129 9.70E-18
IPR027417
Pfam
PF00176
13 273 261 5.40E-54
IPR000330
SUPERFAMILY
SSF52540
199 416 218 3.37E-58
IPR027417
CDD
cd00079
281 414 134 6.04E-27 –
Gene3D
G3DSA:3.40.50.300
287 428 142 1.70E-22
IPR027417
Pfam
PF00271
295 406 112 7.60E-17
IPR001650
ProSiteProfiles
PS51194
296 473 178 17.341
IPR001650
SMART
SM00490
322 406 85 6.70E-23
IPR001650
SUPERFAMILY
SSF52540
449 536 88 3.37E-58
IPR027417
PANTHER
PTHR10799:SF577
459 551 93 0
IPR031056
PANTHER
PTHR10799
459 551 93 0 –
MobiDBLite
mobidb-lite
568 625 58 – –
PANTHER
PTHR10799:SF577
589 687 99 0
IPR031056
PANTHER
PTHR10799
589 687 99 0 –
MobiDBLite
mobidb-lite
666 797 132 – –
MobiDBLite
mobidb-lite
812 891 80 – –
SMART
SM00297
893 1008 116 0.0023
IPR001487
Gene3D
G3DSA:1.20.920.10
895 1001 107 7.20E-05
IPR001487
SUPERFAMILY
SSF47370
944 1005 62 2.35E-05
IPR001487
MobiDBLite
mobidb-lite
1018 1204 187 – –
PANTHER
PTHR10799
1042 1061 20 0 –
PANTHER
PTHR10799:SF577
1042 1061 20 0
IPR031056

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008094
Molecular function DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
Subterm of
GO:0040029
Biological process Regulation of gene expression, epigenetic Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
Subterm of
GO:0043044
Biological process ATP-dependent chromatin remodeling Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj1g3v2682530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2682530.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.