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Lj0g3v0173019.1

Overview

Field Value
Gene ID Lj0g3v0173019
Transcript ID Lj0g3v0173019.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles 1 74 74 11.543
PANTHER 15 107 93 6.60E-82
PANTHER 15 107 93 6.60E-82
Pfam 15 73 59 1.40E-08
SUPERFAMILY 67 130 64 2.21E-19
Gene3D 75 135 61 3.80E-18
ProSiteProfiles 76 127 52 9.116
SMART 78 125 48 3.90E-08
Pfam 78 126 49 8.80E-11
ProSitePatterns 79 124 46
MobiDBLite 131 153 23

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0173019.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0173019.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.