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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1909910 |
| Transcript ID | Lj4g3v1909910.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 4 | 61 | 58 | 8.64E-09 | ||
| PANTHER | 4 | 120 | 117 | 1.40E-127 | – | |
| ProSiteProfiles | 10 | 62 | 53 | 9.072 | ||
| Gene3D | 12 | 60 | 49 | 1.90E-07 | ||
| SMART | 12 | 60 | 49 | 6.00E-06 | ||
| Pfam | 12 | 61 | 50 | 4.90E-07 | ||
| SMART | 13 | 59 | 47 | 6.9 | ||
| ProSitePatterns | 13 | 59 | 47 | – | ||
| MobiDBLite | 107 | 140 | 34 | – | – | |
| Gene3D | 136 | 213 | 78 | 2.20E-21 | ||
| PANTHER | 143 | 374 | 232 | 1.40E-127 | – | |
| SUPERFAMILY | 145 | 198 | 54 | 4.78E-17 | – | |
| Pfam | 152 | 190 | 39 | 1.60E-09 | ||
| CDD | 152 | 194 | 43 | 6.15E-10 | – | |
| SMART | 152 | 190 | 39 | 3.80E-06 | ||
| ProSiteProfiles | 152 | 191 | 40 | 12.106 | ||
| SUPERFAMILY | 244 | 379 | 136 | 3.98E-39 | ||
| SMART | 265 | 387 | 123 | 6.20E-28 | ||
| ProSiteProfiles | 270 | 405 | 136 | 30.551 | ||
| Pfam | 273 | 375 | 103 | 4.50E-28 | ||
| Gene3D | 281 | 379 | 99 | 2.20E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj4g3v1909910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1909910.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.