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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3339680 |
| Transcript ID | Lj2g3v3339680.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356499501|ref|XP_003518578.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 3 | 60 | 58 | 1.64E-06 | ||
| PANTHER | 5 | 595 | 591 | 6.00E-287 | – | |
| Gene3D | 10 | 58 | 49 | 4.70E-05 | ||
| SMART | 12 | 56 | 45 | 5.60E-05 | ||
| ProSitePatterns | 13 | 55 | 43 | – | ||
| MobiDBLite | 88 | 112 | 25 | – | – | |
| Gene3D | 116 | 187 | 72 | 3.60E-20 | ||
| SUPERFAMILY | 118 | 170 | 53 | 1.26E-14 | – | |
| Pfam | 125 | 169 | 45 | 9.90E-08 | – | |
| CDD | 126 | 168 | 43 | 8.22E-10 | – | |
| SMART | 126 | 164 | 39 | 1.90E-05 | ||
| ProSiteProfiles | 126 | 165 | 40 | 11.501 | ||
| SUPERFAMILY | 229 | 423 | 195 | 1.91E-69 | ||
| SMART | 250 | 407 | 158 | 2.10E-79 | ||
| ProSiteProfiles | 255 | 403 | 149 | 51.394 | ||
| Pfam | 257 | 406 | 150 | 1.00E-47 | ||
| Gene3D | 266 | 439 | 174 | 2.20E-66 | ||
| SUPERFAMILY | 481 | 589 | 109 | 6.52E-10 | – | |
| Gene3D | 482 | 590 | 109 | 2.20E-17 | ||
| ProSiteProfiles | 497 | 555 | 59 | 10.262 | ||
| SMART | 497 | 554 | 58 | 9.00E-06 | ||
| Pfam | 497 | 552 | 56 | 1.70E-06 | ||
| ProSitePatterns | 512 | 521 | 10 | – | ||
| MobiDBLite | 656 | 681 | 26 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj2g3v3339680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3339680.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.