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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3724440 |
| Transcript ID | Lj3g3v3724440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: structural maintenance of chromosomes protein 6-like [Cicer arietinum] gi|502168978|ref|XP_004514508.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1058 | 1058 | 0 | ||
| PANTHER | 1 | 1058 | 1058 | 0 | ||
| MobiDBLite | 1 | 21 | 21 | – | – | |
| Gene3D | 26 | 205 | 180 | 2.40E-39 | ||
| SUPERFAMILY | 26 | 207 | 182 | 6.82E-36 | ||
| Pfam | 26 | 1055 | 1030 | 3.40E-21 | ||
| CDD | 26 | 180 | 155 | 5.04E-44 | – | |
| Coils | 213 | 253 | 41 | – | – | |
| Coils | 259 | 314 | 56 | – | – | |
| Coils | 336 | 420 | 85 | – | – | |
| SUPERFAMILY | 462 | 649 | 188 | 8.63E-08 | ||
| Coils | 636 | 684 | 49 | – | – | |
| Coils | 725 | 759 | 35 | – | – | |
| Coils | 774 | 794 | 21 | – | – | |
| Coils | 897 | 917 | 21 | – | – | |
| Gene3D | 933 | 1040 | 108 | 2.40E-39 | ||
| SUPERFAMILY | 947 | 1053 | 107 | 6.82E-36 | ||
| CDD | 964 | 1060 | 97 | 1.25E-42 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Double-strand break repair via homologous recombination | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Cellular component | Smc5-Smc6 complex | A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans. | ||
| Biological process | Chromosome organization | A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome. |
Expression pattern of Lj3g3v3724440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3724440.1, powered by CORGI.
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