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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0023500 |
| Transcript ID | LotjaGi4g1v0023500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA helicase; TAIR: AT5G46280.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q9FL33|MCM3_ARATH DNA replication licensing factor MCM3; TrEMBL-Plants: tr|V7CNV8|V7CNV8_PHAVU DNA helicase; Found in the gene: LotjaGi4g1v0023500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2899714..2904824) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCTCAGCGAAGAAGTTAGGGCAGCTCACAAGCGAGAATTCGCCGATTTCCTCGATCAAGATGTACGCAATTTTCA TTCATTCATTCATTCATTCATTCATTCGCATTTTGCTGGATTTGTAGTCATTGTTGTTGTTCAATTTGCAATGATTTTTG TTTGTGTTGAATTAGGTTGGACAAGGCATTTACATGAAGGAGATGAAATCCCTCATCAACCTCAAGCGTCGCCGCCTCAT CGTCGACATCTCCGATCTCCACAACTTCCGCGACTTGGGAAACAGGTCATTTCATCACACCCACTAGTTTCCCTTTACAA AAATCAATTTTTTTTATTTTTTATTTTTTGTGGATTTTTAGGATTTTGAGGAATCCTAGTGAGTACATGCAATCCTTCTG CGATGCGGTCACGGATGCGGTTCGTGCTATTGATCCCAAGTTTTTGAAGGAAGGGGAACAGGTGCTTGTGGGATTTGAAG GTCCTTTTGTTTCTCGCCGAGTCACTCCCCGGGAACTTCTGTCTCAATTCATTGGTTCCATGGTCTGTGTTGAGGGCATT GTCACAAAATGTAAGACTGCCTTCTTCTTTATTTGATTAAATGATAGAATGCTGTAATTGCTGTTAGTTTTTCATGAATC CTAACATTACATTACTCTAGAACTAGCTTCTTTTCTGTCTTTCGATCTTTAGTCCATTTTGGGAATGATTTTGTTTTTCG TTTCAATTACTCTTACTTTGAAGTTATAAGGCAATGTGGGTCATTGGTTTACCTTATAATTGCTCTTAATGTTCAAGGGT TTAAGCTTTACCTCTGTTCTGTTGGTTAATGTTCTGAAATAGTATTTTTGCGTTATCAAATATTCAACTTCATAGTTATA AATGATTTAAGCATTTTATTTGATTGATAGGTTAATGCCATTTGTGCTAAAGATATATTCTTGATTGATCCTTGAGTGTC ATGTTATGCAATATGATGGTCATTTTCTGGGGAAATGCATGCAATCTCTTTCCATTACAATGAGCAATTAGGTTTTATCT TATGCTATTTCTTTTTTCTCATTTTACTCTTGCTGTTCTGTTACATACAGTAAATTTATGAACCCCCAATTCTGCCTGAA GCATGCAGGAAAATAACCTGTTTTTGTTTATAGGTTCTCTTGTTAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCC ACCACGGGAAACTTCACCACTCGTGATTATCGAGATATTACATCCAATTTGGGCTTGCCAACAGGGTCTGTTTATCCTAC AAGGGTAATCTCGAGATCCTTGATTTTTAACACCATTTACATTACCTGAGGATGATGTTTACTCACTAAATGATTGTTGT AGGATGAAAATGGCAACTTACTTGTCACTGAGTTTGGATTGTGCAAATATAAAGATCATCAAACCTTGTCCATGCAAGAA GTTCCTGAGAATTCTGCTCCTGGTCAGCTCCCAAGAACAGTGGATATCATAGTGGAGGATGACCTTGTTGATTCTTGCAA GCCAGGAGATCGTGTGGCAATTGTGGGGATATATAAGGCTCTTCCAGGAAAAAGCCAAGGCAGTGTGAATGGTGTATTTA GGTAGCTCCTGAAAATACACTAATATAATTCCTTTACTCCTGCTTTCCTGAACTGAAACCTGATTGATTGATTTGTACGC AGGACTGTGCTCATAGCGAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCTCCATTTTTTAGTACTACCGACCTCAG TGACATAAAAAAGTTAGCTAAAAGAAATGATATATTTGACCTGCTTGGTAATTCAATTGCACCTTCTATATACGGACATA CTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGG TTAGTGGTTTCATTTTTTTTTTCATTTTCTACCGATGGGTGATGGTTGGTTTAATTGAAGTTCAACCTCCACATATTTAT ACTTTTCTCTGAACACTGTTTTGAAGTGAAGCTTGTAATGCTGATCTGTTCTTGTTCTTTTAGTGACATTAACATGATGA TGGTCGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTGCGAGCAATTATGAATATTGCTCCCCTGGCCATATCAACAACA GGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCTGATCAAGAAACTGGTAAATCATTCTTCATGAACTA TCCATAATTCTCTTGAAACATTTGTCTTCTAAAGAAAAATTGTAATTTCTTTCTGCCAGGGGAAAGAAGACTAGAAGCTG GGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCAATA CACGAAGTTATGGAACAGCAGACTGTGACAATTGCGAAAGCAGGGATCCATGCATCGCTTAATGCTCGATGCAGTGTGGT GGCTGCTGCGAATCCCATATATGGAACTGTAAGTGGAATGCAGTGAGTTTATTTCTGTGCATTTTAAACTTCAGAAGTTA CTAATATCCTGTTGTATCTTAATACTTTTTTTAATTTGACCTTGTGTGATTTTATAGTATGATCGTTCGTTGACCCCAAC TAAAAATATTGGACTACCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTGATA TTGATCGTCGAATATCAGAGCATGTCCTGCGTATGCATCGATTTCTTTCGCCCATGGATGGAGGTAGTTGAGCAGTTTTC AAAAAAATGCTAGAAGCATGCTTATACTGAGATTCTTTTATTGAAATTACCTTTACCAATGCAGGTGGGGCAGCACTAGA TGGGAGCTCAGGATATGGAAGACAAGATGAAGCTGATGCAGAATCATCTATCTTTGTCCAATATAACAGAATGTTACATG GGAAGAAAACTGTAAAAGGAAACAAACGTGATACACTCACTATAAAGTTTCTTAAAAAGTATATCCATTATGCTAAGCAT AGGGTTCAACCTGATTTGACTGATGAGGTGAGGACATTTTCTGTTACTAATAACAATGCCGTTTTTTCTTGATTTATGAC AAAGGAATTCTAGCAACACATCTCCAACGCTTTTCATGTGATTTACTCATTTTTGAAAAGTCAAAACATTTTTAAAAAAG TGAGACAAATGTGGTGACTTTTAAAAAAACAAACTAATCAAATGAAGTGTGTTGGCAAGTTTGTAGCACTCCTTTTATGA CGAATTCCCGTTAATATTTTGCAATTGATCCATTTTAATCAATTTTTTGTCTGCTGTATGTAACTTGCATTTACCAAATG GTTCTTATGAAATCTTATTATTTCGGTGGTTGTTATGCTTCTGTTCCAATCCCTTAAATTAACTTGTGACTAGCACTAAT ACCAACTAAGTTTGTCCACAGGCATCTGACCAGATAGCCACAGCATATGCTGAGCTCAGAAATTCAAATTCAAATGCTAA GGTTAGCTTTGGGAATTGCAGTTGGCTTAAATCATATCAACAGTTTTTTATTGATATATTCTGTATTTTGCTGGTTTTAT ACTCAGACTGGAGGAACGCTTCCTATAACTGCGAGAACTTTAGAAACCATTATACGTCTCTCAACTGCTCATGCCAAATT GAGGTTGAGCATGCAGGTACTGGACTTGGCCCCACCTTTCAGATATGTATACTTATTATATTTATTAGATACAAGTCTAT TTTGATACCGTGTCCAAACTCCAGAGGGCATTTCAAATTTACTTCTTTGTCGTTTCCATATTTAGTTCTGGGGATCAACA TTTTGCTGCTCAGAAGTAGTACTGTCACTTTGTTGTTTGAGTGGTCAATGTTAGGACTTGATAAAATAACGATTGCTCGC CACGAAATAGCTAAATTTACTTTAAAGCAAATGTTTGAATCACTTCCAAAACTAATGCTTCTAAAATAAATTTTACATAG TATGTAATATATACTTTGGTCAAATATGATCTTCGCATCCTCATTAACTATATATTTATTTTTTTCTCATTGCAATTGTT ATTCTGCTTGTGAGTTACAACTAAGCGGTACTTCATCAGCTTGTGTGTTTTCATATTGATTGTTCAGTACGCTTTCTGAT TGAGTTTCTGCCTGTCTTGCCAGGTTACAAAGACTGATGTTGACGCTGCTTTGAAGGTTCTTAATTTTGCGATATATCAC AAAGAACTGACAGAAATGGAGGACCGTGAGCAAGAGAGGGAGAGAGAATTGGAGAGGAAGCGTGTTGCTGATGGTGATAA TGCTGGTCCTGAGCGTGATCCTAAACGTACACGAGGGTGAGTAGTAGTTTAAACTCTTTTGGTGTAGCTAGACATATTTC CATATTATATCCAGAGAAGGTTAATAGGCATCCTTCTACAATAGAAAGCATGATGGTACCACTTAATATTGAAGTTTTTA TGTTTCTCAGAAACTTATTTAACCATGAATGAACTTTCAAAACCTCTTGTTTTTTTTACCAGGTCAACATCAGATGCCAT GGAAGTGGACGATGATTCAGCAGCCCCATCTGCTGTCAGTCTCACTCCTGAAAGGTCCTTCATCTGTCAATCTCAAACCT CCTACAACTTTGCTTTCTTAAATTGAAATCTCTGATCTACACGATTCTGATGTAAAATACTTTCCATTGGCATGCAGAAT CGAAGCATTTAACTCTCTATTTGGTCAGCATATGCGTGCCAACCGCTTGGACCAAATATCTATTGCAGACATTGAGGATG TTATCAAAGGATCTGATTCCATATACAGCTCAGAGGATATATTAGTCCTATTAGAGGTACTATCTTTTGAGCTGTTCTCC GTTTCTCTCTTTAGCTTTGTCTTTATCGTGATGTATATGTCGTTCCATGCTCCTATCATGAGCTCTGATAACAGTGGCTT TTGTCTTTTCTGTAATTTCAGAAGTTGCAAGAGGACAATAGAGTGATGATAGTTGCTGGAATGGTGCATATGATATCAGG TTGATCAGTGCACAATCTCGTGAATGATGATTCAGGCAGGTATGTGATTTTACAAATTGACTGTTTTATTC
CDS sequence (LotjaGi4g1v0023500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTCAGCGAAGAAGTTAGGGCAGCTCACAAGCGAGAATTCGCCGATTTCCTCGATCAAGATGTTGGACAAGGCAT TTACATGAAGGAGATGAAATCCCTCATCAACCTCAAGCGTCGCCGCCTCATCGTCGACATCTCCGATCTCCACAACTTCC GCGACTTGGGAAACAGGATTTTGAGGAATCCTAGTGAGTACATGCAATCCTTCTGCGATGCGGTCACGGATGCGGTTCGT GCTATTGATCCCAAGTTTTTGAAGGAAGGGGAACAGGTGCTTGTGGGATTTGAAGGTCCTTTTGTTTCTCGCCGAGTCAC TCCCCGGGAACTTCTGTCTCAATTCATTGGTTCCATGGTCTGTGTTGAGGGCATTGTCACAAAATGTTCTCTTGTTAGGC CAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAAACTTCACCACTCGTGATTATCGAGATATTACATCCAAT TTGGGCTTGCCAACAGGGTCTGTTTATCCTACAAGGGATGAAAATGGCAACTTACTTGTCACTGAGTTTGGATTGTGCAA ATATAAAGATCATCAAACCTTGTCCATGCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAGCTCCCAAGAACAGTGGATA TCATAGTGGAGGATGACCTTGTTGATTCTTGCAAGCCAGGAGATCGTGTGGCAATTGTGGGGATATATAAGGCTCTTCCA GGAAAAAGCCAAGGCAGTGTGAATGGTGTATTTAGGACTGTGCTCATAGCGAACAATGTTTCTCTTCTCAACAAAGAGGC TAATGCTCCATTTTTTAGTACTACCGACCTCAGTGACATAAAAAAGTTAGCTAAAAGAAATGATATATTTGACCTGCTTG GTAATTCAATTGCACCTTCTATATACGGACATACTTGGATAAAGAAAGCAGTGATTTTGTTGATGCTTAGTGGAGTGGAG AAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTCGGTGATCCCTCTGTTGCCAAGTCTCA ACTCTTGCGAGCAATTATGAATATTGCTCCCCTGGCCATATCAACAACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAG CAGCAGTTACTTCTGATCAAGAAACTGGGGAAAGAAGACTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTC TGCATTGATGAGTTTGACAAGATGAATGATCAAGATCGTGTTGCAATACACGAAGTTATGGAACAGCAGACTGTGACAAT TGCGAAAGCAGGGATCCATGCATCGCTTAATGCTCGATGCAGTGTGGTGGCTGCTGCGAATCCCATATATGGAACTTATG ATCGTTCGTTGACCCCAACTAAAAATATTGGACTACCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTG GATCAAATGGATCCTGATATTGATCGTCGAATATCAGAGCATGTCCTGCGTATGCATCGATTTCTTTCGCCCATGGATGG AGGTGGGGCAGCACTAGATGGGAGCTCAGGATATGGAAGACAAGATGAAGCTGATGCAGAATCATCTATCTTTGTCCAAT ATAACAGAATGTTACATGGGAAGAAAACTGTAAAAGGAAACAAACGTGATACACTCACTATAAAGTTTCTTAAAAAGTAT ATCCATTATGCTAAGCATAGGGTTCAACCTGATTTGACTGATGAGGCATCTGACCAGATAGCCACAGCATATGCTGAGCT CAGAAATTCAAATTCAAATGCTAAGACTGGAGGAACGCTTCCTATAACTGCGAGAACTTTAGAAACCATTATACGTCTCT CAACTGCTCATGCCAAATTGAGGTTGAGCATGCAGGTTACAAAGACTGATGTTGACGCTGCTTTGAAGGTTCTTAATTTT GCGATATATCACAAAGAACTGACAGAAATGGAGGACCGTGAGCAAGAGAGGGAGAGAGAATTGGAGAGGAAGCGTGTTGC TGATGGTGATAATGCTGGTCCTGAGCGTGATCCTAAACGTACACGAGGGTCAACATCAGATGCCATGGAAGTGGACGATG ATTCAGCAGCCCCATCTGCTGTCAGTCTCACTCCTGAAAGAATCGAAGCATTTAACTCTCTATTTGGTCAGCATATGCGT GCCAACCGCTTGGACCAAATATCTATTGCAGACATTGAGGATGTTATCAAAGGATCTGATTCCATATACAGCTCAGAGGA TATATTAGTCCTATTAGAGGCAGGTATGTGA
Protein sequence (LotjaGi4g1v0023500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLSEEVRAAHKREFADFLDQDVGQGIYMKEMKSLINLKRRRLIVDISDLHNFRDLGNRILRNPSEYMQSFCDAVTDAVR AIDPKFLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTTRDYRDITSN LGLPTGSVYPTRDENGNLLVTEFGLCKYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVAIVGIYKALP GKSQGSVNGVFRTVLIANNVSLLNKEANAPFFSTTDLSDIKKLAKRNDIFDLLGNSIAPSIYGHTWIKKAVILLMLSGVE KNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVV CIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVL DQMDPDIDRRISEHVLRMHRFLSPMDGGGAALDGSSGYGRQDEADAESSIFVQYNRMLHGKKTVKGNKRDTLTIKFLKKY IHYAKHRVQPDLTDEASDQIATAYAELRNSNSNAKTGGTLPITARTLETIIRLSTAHAKLRLSMQVTKTDVDAALKVLNF AIYHKELTEMEDREQERERELERKRVADGDNAGPERDPKRTRGSTSDAMEVDDDSAAPSAVSLTPERIEAFNSLFGQHMR ANRLDQISIADIEDVIKGSDSIYSSEDILVLLEAGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 739 | 737 | 0.0 | – | |
| PANTHER | 3 | 739 | 737 | 0.0 | ||
| Gene3D | 5 | 103 | 99 | 5.1E-16 | – | |
| Pfam | 12 | 89 | 78 | 1.3E-11 | ||
| SUPERFAMILY | 13 | 259 | 247 | 1.47E-56 | ||
| SMART | 104 | 643 | 540 | 3.6E-267 | ||
| Pfam | 109 | 239 | 131 | 4.2E-31 | ||
| Gene3D | 113 | 260 | 148 | 8.3E-50 | – | |
| Gene3D | 135 | 189 | 55 | 8.3E-50 | – | |
| PRINTS | 181 | 195 | 15 | 1.3E-26 | ||
| PRINTS | 207 | 219 | 13 | 1.3E-26 | ||
| Pfam | 277 | 499 | 223 | 3.2E-96 | ||
| ProSiteProfiles | 289 | 495 | 207 | 94.709 | ||
| CDD | 292 | 641 | 350 | 0.0 | – | |
| SUPERFAMILY | 299 | 656 | 358 | 6.49E-39 | ||
| PRINTS | 330 | 345 | 16 | 1.4E-32 | ||
| SMART | 331 | 484 | 154 | 2.2E-6 | ||
| PRINTS | 390 | 404 | 15 | 1.4E-32 | ||
| ProSitePatterns | 398 | 406 | 9 | - | ||
| PRINTS | 418 | 431 | 14 | 1.4E-32 | ||
| PRINTS | 442 | 454 | 13 | 1.4E-32 | ||
| PRINTS | 458 | 468 | 11 | 1.3E-26 | ||
| PRINTS | 469 | 477 | 9 | 1.4E-32 | ||
| PRINTS | 491 | 501 | 11 | 1.3E-26 | ||
| Pfam | 556 | 639 | 84 | 3.6E-26 | ||
| PRINTS | 630 | 645 | 16 | 1.3E-26 | ||
| Coils | 644 | 667 | 24 | - | – | |
| MobiDBLite | 650 | 702 | 53 | - | – | |
| MobiDBLite | 650 | 689 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. | ||
| Cellular component | MCM complex | A hexameric protein complex required for the initiation and regulation of DNA replication. |
Expression pattern of LotjaGi4g1v0023500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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