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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0262900 |
| Transcript ID | LotjaGi3g1v0262900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA helicase; TAIR: AT2G16440.1 Minichromosome maintenance (MCM2/3/5) family protein; Swiss-Prot: sp|Q0WVF5|MCM4_ARATH DNA replication licensing factor MCM4; TrEMBL-Plants: tr|A0A1J7GYJ8|A0A1J7GYJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0262900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:48654443..48660257) extracted from Lotus japonicus Gifu genome v1.2.
AGATTTCTGAAAAAAACAAAAACAAATGAGATCAAAGCCCATAAGGCCCAAAACATTCTGGCGGGAAAACACGACTCTTA CCCCGCCATAACTTGGAGCTATTTTCCCTCGCAAACTGTCACTCTACCATTCTCCCCTTTCCTCATTTCGGCGCGTTCAC TACTCCCAAATCGCTGTCACAGCCATGGCTTCCGATTCTCCTTCTCCGAGTTTCAACAACGGTTCGTATCACTCATCTCT CTCCGATTTCACTTTCTTCTTCTTGTGATTTCTGATTTCCAATTTGTTGAAACCCTTTGTTTCAATTTTCAGGTCCTTCA TCCCCCGACGATTCCAATTCCAGCCCAATCGGCAACACCTTTTCCTCTCCCGGCCAGAGACGCCGCCGCCGCTCCACCAC TCCATCAGCGTCCGGTACCCCGCCGCACCACCGCTCCCGATTCGCCTCCGATGCCACCCCAACTCCCTCGCGCCTCCGGC AAAGAGGCGGCGGCGGTGGTGGCGGTGTGCCCTTCACGCCCACCTCCACCTCCGACGACGTGCCTGTCTTCTCCGACGGC GGCGATGACTTCGACATGGACGATGCCAGGCCTACTTATGTCTGGGGCACCAACATAAGCGTGGAGGACGTGAACAACGC GATTCATAGGTTTCTGAGGGATTTCAGGGAAGCAACTACAACTACTGGTGATGATGATGATGACGGGTTGTTGTTGCACA CTGAAGGGAAGTATGAGAAGTTGATCAGGCAGGTTATTGAAATCCAAGAGGATTCTTTGGATGTTAATGCGCGTGATGTG TTTGATCATGACCCAGATTTGTACACCAAGATGGTTAGGTACCCTCTTGAAGTGCTTGCGATTTTCGACTTGGTTTTGAT GAACATGGTTAGCCGAATGAATCCCAGTTTCGAGAAGCACATTCAAACTCGGATTTTCAATCTTAAAACCTCCACATCAA TGAGAAATTTGAACCCCTCTGGTGAGTTTTTACGCCTTCCCCCTTTGTAATTCCAAGTTGTGTCTTTTTGCAAGCAAATT GACTGATTGAGGCTTCTTTTTTAGATATTGAGAGGATGGTGTCACTCAAGGGAATGATTATAAGATGTAGCTCAATCATA CCTGAAATAAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGGTTTTGCACTGAACCAGTTGCTGTAGAAAGAGGTAATCC CATGGCATGTTTTTTTTTCTCCCATTTATGTATTGTGTTATCAGTTAAGTGCCCTTTGCTATTTGTGTTGTTTTGCTGAG TATTGTGATTTTTAGGGCGGATTACTGAACCTACTTTATGCTTGAGGGAAGAGTGTCAGTCCAGGAACTCAATGACACTG GTTCACAACCGATGCAGGTAATGCACACCTATGGTTTACTTGTTTAAGTAAGACCTTGAGGGAGCCAGATTTTGAAGCAA GCAAGATTCCTTAGATTTCCTTTTTGGTTTTTGCTTTTGACCGAGAGCAATCAGTGGCAGAACTGAAAATTTTCTGGCCA AGTAAAGTTTAGACATAAATATAAGTTAATCTTCTGAAACTCATCTTCTACTCTTTGAAATTGTTATTTTAAAGAGGATT GAGTTCTTTCTATGTTAACAAATAAAATTAACCTGGTGTTAATGAGAAAAGTTAATATATTGATCCCTGTGTGACAACTC GATTAAAGCTCATGCTCATCCTAAAATACAAGTGACAAGTGTTAGTTATGTCTAGAAGGTTAAGAATTTTGCTTCCTGTA TCGAATGGTTAAGATAAGGGTTTAAATATTAATATACTTGAAGAACAATGGATAGATTTAAATGACACGTAAATCGTAAT ACATGGGTTGACGATTGTATTAAATAATGATCTTGATTGTGTAACTATTCAGCTTGCATATAAATAAAATGTAACTATTC TGCTTTGTGTTCAGGTTCGATAGCTATGAAACTGCAATTAACTGATTTGTTATAAAATTGCAGGTTTTCAGATAAGCAAA TTGTGAGGCTCCAGGAGACTCCTGATGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAG CTGGTAGATGCTGGAAAGCCAGGTGACAGAGTTGAGGTGAGAGAATACACTATGACATACTTTCTGACAGATAAATATCC ATTTGCTTTTGCTTAATTATCCCTTCATGTCTTTTCTTGTGCATCAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGG GTTGGGCCAACTCGGAGAACTGTCAAGTCATTATTCAAGGTATGAATTATGTTCTTAACTCATCTAACATTTAGAGCTCC ATCCTGACATTTTCTATCTTGTCTCCTTAATGTTTCTGTTTTGTCCCCTTCATGTTGTAGACGTATATTGATTGTCTTCA CATAAAGAAATCCGATAAGTCCAGGATGCTGATAGAGGACACTATGGAGGTTGAATATACCCAGGGAACAAAATCAGAAG TTACCTTTGATGACGTAAAGGTACAGTTTGTATCTATCTTCTATGAAATCCACTTCTTGCTTATGCCCTTGCTAATTGTG TGTTTGTCTGAGTTGCAGGTGGCTAAACTGAGGGAGCTGTCACAAGACCCGGATATATATGAAAGACTGACAAAGTCATT AGCGCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGGTTACACACATCTTTCTCTCTAGCTATG CATTCATTGATTAGTTGACCGGTATTCTGAGGATGCTAATTTTTATTTCGTTGCAGCTTTTTGGTGGCAATGCTTTGACA CTGGCATCCGGCGCTAGCTTCCGTGGTGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAACTACT TCAGTACATACACAAATTATCTCCACGTGGCATTTACACAAGTGGCAGGGGGAGTTCTGCTGTTGGATTGACTGCTTATG TGACCAAAGATCCTGAAACAGGAGAAACTGTGAGGACTTAATACATTTTCTATTTTTTTAATCGCCTTCTGTACAAGAAT TTTAGTGGACCCTAATTTTTCTGCTTAACCTTCAGGTTCTTGAGAGTGGTGCTCTAGTTTTGAGTGATCGTGGTATCTGC TGTATAGATGAATTTGATAAAATGTCTGACAATGCCAGGAGCATGTTACACGAGGTTGATTACAAATTTTTAGTCTATGC ATATTTGCTAATGAAGTATTTCTGCAGTCATATCTGTCTGTTCTTTCTCCAAATCTTGCTATGTTTGAAATATACATTAT GACAAGGGCTGTCATACTAATAAGCCTGTGACCTGTGAACTGTGTACTTTTGAATATCTAATGCACTTGCCTCTGTTTAT TCCAGGTTATGGAACAACAAACTGTTTCAATAGCGAAGGCAGGCATTATTGCTTCCCTTAATGCTAGGACTTCGGTGTTG GCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTCT GTCCAGGTTAGATGTTGGACGTGAACTATGTTAACTACATGATGGGTTTGGCCGCATATTGATGCAATTCCTGCTACTGG GTAGCTTATTACTATTTCGTGCCTTCGCCTTGCCTCTAATTTTTATGATTTATTGTTAAGCAAGAGAAGGAGCAATCATG TTATTGAATTGATTGTTAATTCTCTTTATCAAACCATAGTGTGAGGAGTAAGGGTTAAAAATGAGCTTTTTAATGCCTTG AAAAAATAAATTCACATTACTAAAAAATTTGTAATTGTTACAATGAACTGAGTTGATCTTTGTCCTTGCAGGTTCGATTT GATCTACTTAATCCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACACATTGTTTCCCTCCACTTTGAGA ATCCTGATGTAAAATCTTCCATTCATCTTATTCAATGTTAAGATCCAAGAAAAACTCAAGCAGTTTTACTGATTTACTTG CTTAATTCTGTGTCTAATTGCAGAACATGGAGCATGACGTGTTGGACCTCTCTACACTAACTGATTATGTTACCTATGCC CGAAAGTACATACACCCACAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGGTATGTGGAAATAAGAAGAAGAGG AAATTTTCCGGGGAGTAGTAAAAAGGTGATACTTTTCCCTTCAAAATGGCTCCATTGCGCCTTTTTATACCTGTTGTATG CAACTAAATGTCGCCGTTTCTTAGAATATTGATCGATTGCTCAGAAATTAGTTTCGATCATAAAATTCAATGTGTGCTGC AATAAGTTGAGTGATTTCTGCACAATTATGGATGATATGCATGACTATTTTGTATTAGTATTGATATCTGATATGAATGA GTTAATTCCTGATATTTGAGTTATTCCGATTTTCATTTTTTGTACATGTTTTTCTACTGTATATGTTAATCTGTCCAATA TATTAAACAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTTTGATACGCCTTAGTGAAGCATTGGCTCGGATTCGCT TCTCAGAATTGGTTAGTTAAGCTTTGCTTAGTTTCTTCTTGATGCTGATATGAATAGCATGCAGACATATTAAATAACAT GATAAGTGTTATCAAATATCCGCCATGGCTGGCAGTTTTCCATGGCCGTTTTTTGGCTTTCCGCCATGGCCGATATCCCG CCATATAGCCGTCATATTCCGCTGTTTTTTGTCATGTATGGCGGGATTTCAGCTTTCCATCATGGCCCGCCATCCGCAAT TAACAACACTGAACATGATGCATACAGGTTGAAAAACGTGACGTGATGGAGGCATTTCGGCTTTTGGAAGTTGCAATGCA ACAGTCTGCAACGGATCACTCTACTGGTAGCTTTCCGACAATGCTATAATTCTTGCTTTATACTATCACCCAGATAAACT AGATAAAATGTGCTTATTTTTCATGCACTTTTTTCTTCGCAGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCG GCAAGTGAAAGGATGAGACGGGAAAGTCTGCTACAAGCAACGCGGAACATAATCATGGAGAAGATGCAAATTGGGGGACC ATCCAAGCGGTTATTGGAGGTATGCTATCTTGCTCTACATGGAATTGTACACAATTGATCATGTCATTTTGGGCTGATGT TCTAATATATTTAATATAAAATGTAGTTATTGGAGGAGTTGAAGCAGCAGAACACTGGAAGTGAAATTCATCTTGCTGAT GTAAGTGTCCTTACCCTTATTTCAGACAAAAAAAAAGAGAAATTTACCTCTGTTAATACGTTCTCTATCTCAAAGGATAA TTGGACTCATGCACCTAACTCATGTTAACACAGGTAAGGACTGCAATAGCTACTCTTGCCAGCGAAGGATTTATTACCAT GCATGGTGACAGTGTAAAAAGATCATGATAATGAGGCAGGGTCATCAATGGTGAGTGGACTATCTGAAATTTAAGGTGGC TAATGGTTAGTTTCCCGCATGAATTGTGACCTTTTTAGCTAGCAATTCTATATCCAATGGTACATGTTTCATATATGTAT AATTTAGACAGTTAATTTATATGGGTGCGTGCCCTGTGGTTATTGCAATTTCGGTCCAAAAGGGCAAGCTCTTCTTCCTT TGTCTTGAGTAGTTACCAGCGGTTAGAGCTTCCATAGTCCATGTTGTAAAAATTTAAGCTCAATTCGGAGTGGTTTTCTG TTTAGATTTTTATTTTCAAATATAAATTTGAAAAAAAAAACATTCATGTTCGGGA
CDS sequence (LotjaGi3g1v0262900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCGATTCTCCTTCTCCGAGTTTCAACAACGGTCCTTCATCCCCCGACGATTCCAATTCCAGCCCAATCGGCAA CACCTTTTCCTCTCCCGGCCAGAGACGCCGCCGCCGCTCCACCACTCCATCAGCGTCCGGTACCCCGCCGCACCACCGCT CCCGATTCGCCTCCGATGCCACCCCAACTCCCTCGCGCCTCCGGCAAAGAGGCGGCGGCGGTGGTGGCGGTGTGCCCTTC ACGCCCACCTCCACCTCCGACGACGTGCCTGTCTTCTCCGACGGCGGCGATGACTTCGACATGGACGATGCCAGGCCTAC TTATGTCTGGGGCACCAACATAAGCGTGGAGGACGTGAACAACGCGATTCATAGGTTTCTGAGGGATTTCAGGGAAGCAA CTACAACTACTGGTGATGATGATGATGACGGGTTGTTGTTGCACACTGAAGGGAAGTATGAGAAGTTGATCAGGCAGGTT ATTGAAATCCAAGAGGATTCTTTGGATGTTAATGCGCGTGATGTGTTTGATCATGACCCAGATTTGTACACCAAGATGGT TAGGTACCCTCTTGAAGTGCTTGCGATTTTCGACTTGGTTTTGATGAACATGGTTAGCCGAATGAATCCCAGTTTCGAGA AGCACATTCAAACTCGGATTTTCAATCTTAAAACCTCCACATCAATGAGAAATTTGAACCCCTCTGATATTGAGAGGATG GTGTCACTCAAGGGAATGATTATAAGATGTAGCTCAATCATACCTGAAATAAGGGAAGCTATATTTAGGTGTCTTGTGTG TGGGTTTTGCACTGAACCAGTTGCTGTAGAAAGAGGGCGGATTACTGAACCTACTTTATGCTTGAGGGAAGAGTGTCAGT CCAGGAACTCAATGACACTGGTTCACAACCGATGCAGGTTTTCAGATAAGCAAATTGTGAGGCTCCAGGAGACTCCTGAT GAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGCTGGTAGATGCTGGAAAGCCAGGTGA CAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGGCCAACTCGGAGAACTGTCAAGTCATTATTCA AGACGTATATTGATTGTCTTCACATAAAGAAATCCGATAAGTCCAGGATGCTGATAGAGGACACTATGGAGGTTGAATAT ACCCAGGGAACAAAATCAGAAGTTACCTTTGATGACGTAAAGGTGGCTAAACTGAGGGAGCTGTCACAAGACCCGGATAT ATATGAAAGACTGACAAAGTCATTAGCGCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTT TTGGTGGCAATGCTTTGACACTGGCATCCGGCGCTAGCTTCCGTGGTGATATAAATATTCTTCTCGTTGGTGATCCTGGG ACAAGCAAGTCCCAACTACTTCAGTACATACACAAATTATCTCCACGTGGCATTTACACAAGTGGCAGGGGGAGTTCTGC TGTTGGATTGACTGCTTATGTGACCAAAGATCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCTCTAGTTTTGAGTG ATCGTGGTATCTGCTGTATAGATGAATTTGATAAAATGTCTGACAATGCCAGGAGCATGTTACACGAGGTTATGGAACAA CAAACTGTTTCAATAGCGAAGGCAGGCATTATTGCTTCCCTTAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAG TGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTCTGTCCAGGTTCGATTTGA TCTACTTAATCCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACACATTGTTTCCCTCCACTTTGAGAAT CCTGATAACATGGAGCATGACGTGTTGGACCTCTCTACACTAACTGATTATGTTACCTATGCCCGAAAGTACATACACCC ACAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGGTATGTGGAAATAAGAAGAAGAGGAAATTTTCCGGGGAGTA GTAAAAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTTTGATACGCCTTAGTGAAGCATTGGCTCGGATTCGCTTC TCAGAATTGGTTGAAAAACGTGACGTGATGGAGGCATTTCGGCTTTTGGAAGTTGCAATGCAACAGTCTGCAACGGATCA CTCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGGGAAAGTCTGCTAC AAGCAACGCGGAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCCAAGCGGTTATTGGAGTTATTGGAGGAGTTG AAGCAGCAGAACACTGGAAGTGAAATTCATCTTGCTGATGTAAGGACTGCAATAGCTACTCTTGCCAGCGAAGGATTTAT TACCATGCATGGTGACAGTGTAAAAAGATCATGA
Protein sequence (LotjaGi3g1v0262900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASDSPSPSFNNGPSSPDDSNSSPIGNTFSSPGQRRRRRSTTPSASGTPPHHRSRFASDATPTPSRLRQRGGGGGGGVPF TPTSTSDDVPVFSDGGDDFDMDDARPTYVWGTNISVEDVNNAIHRFLRDFREATTTTGDDDDDGLLLHTEGKYEKLIRQV IEIQEDSLDVNARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRMNPSFEKHIQTRIFNLKTSTSMRNLNPSDIERM VSLKGMIIRCSSIIPEIREAIFRCLVCGFCTEPVAVERGRITEPTLCLREECQSRNSMTLVHNRCRFSDKQIVRLQETPD EIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTRRTVKSLFKTYIDCLHIKKSDKSRMLIEDTMEVEY TQGTKSEVTFDDVKVAKLRELSQDPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALTLASGASFRGDINILLVGDPG TSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQ QTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFEN PDNMEHDVLDLSTLTDYVTYARKYIHPQLSDEAAEELTRGYVEIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRF SELVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLQATRNIIMEKMQIGGPSKRLLELLEEL KQQNTGSEIHLADVRTAIATLASEGFITMHGDSVKRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| MobiDBLite | 1 | 89 | 89 | - | – | |
| PANTHER | 94 | 830 | 737 | 0.0 | ||
| PANTHER | 94 | 830 | 737 | 0.0 | ||
| Gene3D | 113 | 224 | 112 | 4.7E-26 | – | |
| Pfam | 121 | 222 | 102 | 2.0E-13 | ||
| SUPERFAMILY | 148 | 379 | 232 | 2.4E-61 | ||
| SMART | 225 | 741 | 517 | 7.7E-265 | ||
| Pfam | 229 | 358 | 130 | 9.6E-38 | ||
| Gene3D | 229 | 368 | 140 | 1.7E-47 | – | |
| PRINTS | 251 | 264 | 14 | 1.5E-24 | ||
| Gene3D | 256 | 308 | 53 | 1.7E-47 | – | |
| PRINTS | 302 | 314 | 13 | 1.5E-24 | ||
| Gene3D | 412 | 746 | 335 | 1.8E-137 | – | |
| Pfam | 415 | 637 | 223 | 1.3E-100 | ||
| ProSiteProfiles | 427 | 633 | 207 | 93.629 | ||
| CDD | 430 | 739 | 310 | 0.0 | – | |
| SUPERFAMILY | 438 | 753 | 316 | 6.63E-44 | ||
| PRINTS | 443 | 454 | 12 | 1.5E-24 | ||
| PRINTS | 468 | 483 | 16 | 1.3E-32 | ||
| SMART | 469 | 619 | 151 | 0.0064 | ||
| PRINTS | 528 | 542 | 15 | 1.3E-32 | ||
| ProSitePatterns | 536 | 544 | 9 | - | ||
| PRINTS | 556 | 569 | 14 | 1.3E-32 | ||
| PRINTS | 580 | 592 | 13 | 1.3E-32 | ||
| PRINTS | 589 | 606 | 18 | 1.5E-24 | ||
| PRINTS | 607 | 615 | 9 | 1.3E-32 | ||
| Pfam | 653 | 739 | 87 | 1.2E-26 | ||
| PRINTS | 741 | 750 | 10 | 1.5E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. | ||
| Cellular component | MCM complex | A hexameric protein complex required for the initiation and regulation of DNA replication. |
Expression pattern of LotjaGi3g1v0262900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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