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LotjaGi1g1v0784500.1

Overview

Field Value
Gene ID LotjaGi1g1v0784500
Transcript ID LotjaGi1g1v0784500.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger CCCH domain protein; TAIR: AT5G08430.2 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7KGZ1|K7KGZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0784500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:135719097..135726390) extracted from Lotus japonicus Gifu genome v1.2.

TTTATTTGCAACCCATCGACTCTCGCTCTTTCTTTCTCGCTCTCTACATGCCTCTCCCCTCCCTTCATTCGCTCTCCCTC GTTCTTTCCGAAAAACAGCTCTGATCTCATCTTCTCTCACTCCTTCATTCTTCTTTTTTTATTCACCAAATCTATACCGA TCTCATAATAAACTGCATCGATCTTGAAGGAAAACATGGTCGTTAAGTGAAAGGGTGTTGGGATAATTTTTCAGAATTAG GGTTCATACCCTGAGGAAAAATTAATCCATTGAGTTTTTTTCACTTGATTTCATTCAGGTATGCTCACATCCTACGGGTT TTATAGATCGATGCTCTAGTGTATGATAGAGTTGAGTAAATTTATTTTTAGGGTTTCGAGCACATACTTAGGGATTTCAT GATTGTGCATGGCTCGTATCGCATTAGATCATCATTTCTAACAGTTTGAAATTGATTGTTGGTGCTCAGATTTTTCCGGT CTAGTTTGATTGAGAATCTTGGAGTCAATCTTGTTGATTGATTCATCATAACTGTGAGTGGTTTTTGTTCTTTATGATAT GTTTAATTAATTTCGGGGGAACTTGATTTTATACATATAAATATCATTCTTGAGTTTTTTTTCAAAGATGTGAATCCTAT TTAATTAATTTTGAGCAAGTCTGGAATTTGATGTGAGCAAGAAATTTACAACCGTTGAATTTGGAATAATGTGAAATTGT GAATTTTGCTTGGAAATAGTTTGATGAGTATTGAAAGATTGACTTTGATTATGGATTTGAAAGACGATTTTGAGGATCAT GTTAGAGCCTTATAGTAGTTGTGTGTGAGATGAAACCACTAGTTCAAGGAGAGGATTACAAATGAGATGTAGTTTTCCTC AATGACATAATATCAATATAATGTGAGAGAGGGAATGAATCTTTTTTAGATAGAGTTTCTCTTTTCAAGTCATTCGATTA TTATTGTTGGTAGCTTTCTTTTGGTTGATGTCCCAATTGATGTTTCTTTATTGGTTGATTATTCTTTTAACTATATGGAG TCTTCAATGGATTTATAATGAGAATGTTGTAACTGTTATTTCATACTTTATTTCAATAGTTTGCACTTTATGACTCAATT TCAAAATTGAACATTTTTCTTGAATTCTAGTGGAAGTAAGATCTCATTTGATAGATTTTATTATATTGAAAAGATTGAAA ATGCAAAAGAGACACAACCAACTTCCTTTTTCATAAGATTTAGGGGACGTGTTAACTTTTGGAAAATTATTTTACGAAAA ACAGGCTTGTCAGACTATGATGATAATCAGTGCTCAGCTATGACTTATCATCATTCATTTTAAAATGTTTAAAATAAAAT AAGTTCCACCAATATTTTTTTCATTTGAAAGTTATTTGGACAAAATATTTATTATTTAATAATTATATCCAAAAATAAAA AAGGAGTAAAGTACACTCACCCCCCTTAAGGTTTGTTAGAATTACACTCCACCCCATTCTTATCTAAAATCTACATCCCA CCCCATTTTATATAGAGGCAAATTTAGTGACGAAAAATATTTTTCATTAATAATTAGTTATTATTTAAATTGTTAATCAA TAATTTCAAAAAAAAAAATCAATATAATCCAATAAATTTAAAAATGAAAACATCACAATCCTCCTCATTCTCTCAATCGC GTTTTTCCTCCGTAAATTCATAATGCAAATTATGCAATAGCACACCTGCCCGATTTACAAACCATATCTCGAACATAGTG AAACATGCTTGTGTTTTCATATTTGGTAATAATTCAATTTTAATCAAAATAATCTCTTTATACCTCCAATTTTCAAAATT GGGTTGTAGGCCAAAAAAGCAACACAAATGGGTGAAGAAAATAGAGAAACAAAATTATGAAAATATGAAGTGGATCTGAG GTTATTAGAGCCCAACGAGGCGGTGGAGCATCGTTTTTAACAAAATCCAACAATATCTAAGACCAACAGAGCGTTCGCTC ACAACTTCAAGGGGTGAAATTCACAAGAAGTAGTTGAACAAGTGGCTTTAGGGATGTGCGATTCACGTTCTGGGGTTCAG GTTGCAACAAAACTTTGAGGCATGGAGGTGCCATGGGGTTTCACATTGTGGGACAGTGGAGCCGTGTTAAAGGGAGTAAA GGCTTGGTGGTGGCCGTTTGTGGTGAGAAATATGATTTGGAGATAGATGAGACGTGGACTTAACAGACAGAGTGAATGGT TTTTTTAAATTTAATTCAGTAAAATTATTTTCATAAATTAATGTATGATAGTGTATATGCATTAAATTTATTTAAATTTT TACTAATTAGTAATTAGTTTTTAGTAGTGAGGAATTTGTTTTCGTCACTAAAATTTGCCTTTATAAAAAATGGGGTGGAG TGTAGATTTTTAAAAAGAATGGGGTGGAGTGTCATTCTTGCAAATCTTGAGGGGGTGAGTGTATTTTAAAAGTTATAAAC GAGTCATTTACAACAAAATTTGATTTGATTGATTTGATTTTTTTGTCAAAAATAGTGAAATCTCCAGAGATTAGACTAAA ACCCTTTGACCTGAGTCTATTTCGTTTCCCAATTTGATGATCAAAGATATTTTTCCTTGAGGTTCACGCAATAAGTATAA ATTGGCAGAGAATCCTAATCATAATTATTATTGTGATCTTTTTCCTTCAATTCAGGTGAAAGAAACTCATTGTGGCCGGT CACAATCACAATGGCTAACAACACAGGAAACGACGCCAAGGGAAAATTTCCCGAAAAAGAAGAGATTGAGGACGTGTGTT TTGTCTGCAAGGATGGTGGTAAACTCATTGTGTGTGATTACGAGTAAGTCTTCTTTCCTTTTCCCAGTAAAATTATAATC TCTTAATCTCTAGTTTGAATGAAATCAATATCAAATATGCTTGTTTGTTTGTTTGTTTGTTTTTTCAGGAACTGTGGAAA AGTTTATCACCCTGATTGTCTTAATAAGGAGGATTCTTTTTTTGACAATGTGGACTACTGGGTTTGTGGTAAGTGTTGGA TTTTTTGATAATATGTTACTTGTCAGCTGCATGAAATGTATCACTTGAATCCTGGTTTTTTGGCTTGTACCATTAGTATT GAAGTCTTAATGTTCCAAACCCGTGTCTCATTCTCTGTCCCGCCAATAAAATTTTAACCTGTCAAATGAAAATCACTGCA GTTACATGTTTCTTACTGCTTTGGTCATGAGCTTTTTTTTATAGATATGACGATATTTTATTGGTGGGACAGGAAATTGA GACACCATTTGGAGACTGAAGATATTGATCCATGTCATTAGCTGTTTTATGATAATATTCTTTTCTACATTAAGTATGAA ATATGAAAATTCAGCCCCATATGCGAGATCAAGTTATAAGAATACAAAAGTAACATGTTTATCATGCAATGTGAACTCAT ATTTTTGCTCTATCATATGAGGGGATGATGTGTTTTCTACACTTATGGTCTCCCACTGAAAATTTTGAAACTTATGAGTA TGTATGTATTATCTTCTGGGGAGTGATGAACTATCTTGAGATGCTTATGCTGCTTTCTATGTGTTTTCAGACAGGCATTA TTGTTGCGACTGCAAAAAAACCCCAGAGTTTTATTGCCTTGGCTGTCCAAAATCCATGTGCAGAAAGTGTTTTGGTGATT CGGATTTCCTTATTCTTAAAGGGATAAAAGGGCTGTGCTTCTATTGTTTCCAGCAGGTTGAGATTATACTATTTAATTTG GAATATGACGCATACGGGGTAAGTGTGTGATAACTTGGATATGTAGAATATTTACTTAATTTACTTTGGATGATGTTGAT TTCAGAATTGCTTTACTACTTGTTGTACCTTTGCTTCACTTACTTTAACAGGGAATATTACAACAAAGAAAATATAGTGC ATGTTTGGAAAGCTAAAATCAGTCAGTTCTTATGAGTAGCTTTTGCGTGTCAAAATTGATTATGGGGAAGAAGAAACCGA TCAAAAAATGCTAATAGCAGTGTCACACTATCACTATCGACTAATAGATTGGTTAAAAAAAAGAGTAACAAAAAAATTAC AAGCAATTATGGTGAAAAGACAGAAAGTTGGGTGACATTATCATTTATAGTTTTTCTCTATTTTGTAGAAGCTAAAATTT ATTCAATTTCTAGATGTAAAAATTATGTAAAACAATGGCATTTTGGATTGTAGATGTTGAAAACATAGACTGCTTGGTGC TTGGTGCTTGTTGCCAAAAGAAAAGAAGTGGCTAATCAGGCCCTGATGCTATGCTACACATGTATATTGAACTAATCTTG ATGTGACAAAATTGAAAAGTCCATTTGGTTGGAAAAACTAAACTGATATAATCAGATTGGTAGTGGTAGTAGCAGTAGTA CGAGTCACAATATACCTTTGCTGCTTAGCTCTTTTTTTTTTTCCTTCATATTGGACTTATTTTTAAAGATAGATGATCTC TACATTGACCATGGAAATGAACTTGTTTGTTTTATGCAGAACAAAATAAGCATGGATGACAAAGAAACATATGAATATTT TTTCAAGGCATACTGGGAAGGTGTGAGGGTTAAAGAAGGCTTCAAGAATGGTGTTAACTCTTCTGCACTGCCCAATTGTA GCAAGAGCAGAAGCTCTCTTTGCAGTGAAGGTGAAGAAGAAAAACAAAATGACTCAAGGCCATCTGATAGTAATGGGGAT CACACCAGTAAGAATACCCCCACCAAACGGAAGAGGCACAACTATGGAAAGAGCAAAAGTTTTGTGCTTGGTAGAAATTG TAGTGAAGGTGAAGAAGAAACACAAAATGAATCAGGGTCATCAGATAGTGATGGAGATCACTCCCGTAAGAATAAGCCCA CCAAACGGAGGTACAATTCTAGAAAGAGAAAAAGTTTTTTGCTTAGTGAAGGTGAAGAAGAAAGACAAAATGAATCAAGG TCATCGGATAGTGATGGAGATCACTCCGGTAAGAATAAGTCCACCAAACGGAGGTACAATTCAAGAAAGAAAAAAAGTTT TCTGCCTAATAGAAATTGCAGTGAAGGTGAAGAAGAAAAACAAAATGACTTGAGGTCATCAGATAGTAATGGAGGTAAGA ATAAGCCGGCCAAGCAGAAGAGGAACAATGTAGTGGAGTTCGTGGGATGGGGATCAAAACCACTCGTTAGCTTCCTTGAA TCAATAGGAAAATTTGAAACAGAACGAATGGCGATATGGGATGTAAAAAAAATCATATTGGACTACATTAAGGAGAAAAA TCTTGTGCACCCCGGAAACGGTAGTAAATTCCTCCCTGATGAAATATTGTTTCCAATATTTGGAAAGAAAGTTATGGCTA AAAGTCAGGTATCTTCTACACTAGAGAAGCACATTGTGGAGAAAGTGGACGATTCGGCTAGGAATACAAAGGATGATCAA AATGGAAACTGTTCTAAGGACAAAAATCATCGTGCCCAGACAGTGTCCTCAGGAAGCAAATTGTCAGGCTTGATTGGAAA ATCCCTATTAAAGAAGGGGGATATATATATTAAATATAGCTGCTTTGCAGCAATTATTGCCAAGAACATAAAACTTGTCT ACCTGAAACAGAGTTTGGTGATGAAGTTTTCCGAACAGCCTGAAAGTTTCAAGGGTAAGGTTGTTGGAACCTTCGTCAGA GCAAAAGTGAATTCCAATGATCATAAGCCAATGAAGTCATACAATCTTGTGCGAGTTATAGGTAAGAAATTACAGACTAT GAATCTTAATGTAGCTGTATGAATCTTTAGTAAATGATCATTTATATTGTTTAACTTTTAGGTGTTGTACATGATGAAGT GCATAACGGAATTCTCTTGCAAGTTTCCTTCATACCTGAAGCCATTTCCATTTCTGAGCTCTCTGATGAAGACTTCACAG AGGTACATGTAAATGACTTGCAGTTAAACCCTGGAATCAGCTATGAGGATGTTTGAAAGAAACTATCTTTCTAATGCCTA AATTGGAATTTATATGATTATTAAGTTAAAGTGAATTCTATTATCTCTTTCATTCTCCTAGAATACATATTAATTGTGTT GTTTACCTTACAGAAAGAATGCGAGGATTTGAAGCAAAAAGTGGAAGACAGCAAGCTTCAAAAGTTGACTGTTGTAAGTT GTAACTTCTGATGAGAAACTGTCTGAAATAGGAATAGAAAATCAGTGAAAATTACTGTAATCTGAAATCAATTTCTCCTA CACGCTCCTGTAGCATTAGTCATGGAAATGTGAATTTCTTAAACAGATTAACTTATTTGTATCTAATGAAAAATCTTAAC TGCTTTATTTCCCCCCATTGGTGCTGGCAGAAGGAGCTTCAAGAAAAGGCTGAAATTCTTCATGAGGATATAACAAAGCA TGTAAGCATCATTGACTCTATGCTAGTTAACATCTATCTTTTTTCTTCTCTCTACTGTTAAAAATATTCAGACTTGTGAA GTAGCATAGATATATTTTCTTGACTCTAGCAAACGAATACTCAGATTCTTTACACCAAATACAATAATAACCCAGGTTTT CAATAGAAAAATCATAATAGTATTTACATATTATTCTATTTACATTTAGTCTGTAAGGGAAATGCCAAAAGTCACGATGC AGAACACAGGAAGCGAAAGTTAACCCCGCTACCTCCATGATTTCCGTCAAATAACATTGTTAATCTGTCACATAAAAACT TCTTGCATCTCTTGTTGCCTTTTTCCTTCATAATATAAATAGCAGTGTTGAATCTGTAATTATTTTGGTTTTCATATTAG TGACATTTAAATTTTGGAAATCTATCTTATTTTTCTGACCTTCCTCACTATGTTTCTGCTAGCGGATTGCAACACGCCTA GTCCATCTGCAAAATCAAATTGACCGTGCAAATCTCACAGGACGAGGAAGAGACAAGATGAAATTGATAGATGAAAGGGA AAATCTTAAAAAACCATGTACACAAGAAAAACTGTTGAAGAGTGTGCCATCAGTTTCCCCTGAGCTTATTGAAGCAAAAT ACATTGAGTCTGATGAAGATTAGCTTGAAAGATGGACAGGACCTAGCTATGACTCTTCTTGCTGTTGTCAGTTTTTTCAG TTAGACTTAAACAAGTGGTGATGAATCTGTATTCTGTACTTTGTTGTGATTTTAGTTTATAATTTTGGGAGCTTTAGACA AGTTTAAAACAAAATTATGGTTGGAGCTCAACCATGAAACTTATTATATTCACAATTCATGACTTTTTTGCTTGGCAAAA TTATTCAAGAGGCC 

CDS sequence (LotjaGi1g1v0784500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAACAACACAGGAAACGACGCCAAGGGAAAATTTCCCGAAAAAGAAGAGATTGAGGACGTGTGTTTTGTCTGCAA GGATGGTGGTAAACTCATTGTGTGTGATTACGAGAACTGTGGAAAAGTTTATCACCCTGATTGTCTTAATAAGGAGGATT CTTTTTTTGACAATGTGGACTACTGGGTTTGTGACAGGCATTATTGTTGCGACTGCAAAAAAACCCCAGAGTTTTATTGC CTTGGCTGTCCAAAATCCATGTGCAGAAAGTGTTTTGGTGATTCGGATTTCCTTATTCTTAAAGGGATAAAAGGGCTGTG CTTCTATTGTTTCCAGCAGGTTGAGATTATACTATTTAATTTGGAATATGACGCATACGGGAACAAAATAAGCATGGATG ACAAAGAAACATATGAATATTTTTTCAAGGCATACTGGGAAGGTGTGAGGGTTAAAGAAGGCTTCAAGAATGGTGTTAAC TCTTCTGCACTGCCCAATTGTAGCAAGAGCAGAAGCTCTCTTTGCAGTGAAGGTGAAGAAGAAAAACAAAATGACTCAAG GCCATCTGATAGTAATGGGGATCACACCAGTAAGAATACCCCCACCAAACGGAAGAGGCACAACTATGGAAAGAGCAAAA GTTTTGTGCTTGGTAGAAATTGTAGTGAAGGTGAAGAAGAAACACAAAATGAATCAGGGTCATCAGATAGTGATGGAGAT CACTCCCGTAAGAATAAGCCCACCAAACGGAGGTACAATTCTAGAAAGAGAAAAAGTTTTTTGCTTAGTGAAGGTGAAGA AGAAAGACAAAATGAATCAAGGTCATCGGATAGTGATGGAGATCACTCCGGTAAGAATAAGTCCACCAAACGGAGGTACA ATTCAAGAAAGAAAAAAAGTTTTCTGCCTAATAGAAATTGCAGTGAAGGTGAAGAAGAAAAACAAAATGACTTGAGGTCA TCAGATAGTAATGGAGGTAAGAATAAGCCGGCCAAGCAGAAGAGGAACAATGTAGTGGAGTTCGTGGGATGGGGATCAAA ACCACTCGTTAGCTTCCTTGAATCAATAGGAAAATTTGAAACAGAACGAATGGCGATATGGGATGTAAAAAAAATCATAT TGGACTACATTAAGGAGAAAAATCTTGTGCACCCCGGAAACGGTAGTAAATTCCTCCCTGATGAAATATTGTTTCCAATA TTTGGAAAGAAAGTTATGGCTAAAAGTCAGGTATCTTCTACACTAGAGAAGCACATTGTGGAGAAAGTGGACGATTCGGC TAGGAATACAAAGGATGATCAAAATGGAAACTGTTCTAAGGACAAAAATCATCGTGCCCAGACAGTGTCCTCAGGAAGCA AATTGTCAGGCTTGATTGGAAAATCCCTATTAAAGAAGGGGGATATATATATTAAATATAGCTGCTTTGCAGCAATTATT GCCAAGAACATAAAACTTGTCTACCTGAAACAGAGTTTGGTGATGAAGTTTTCCGAACAGCCTGAAAGTTTCAAGGGTAA GGTTGTTGGAACCTTCGTCAGAGCAAAAGTGAATTCCAATGATCATAAGCCAATGAAGTCATACAATCTTGTGCGAGTTA TAGGTGTTGTACATGATGAAGTGCATAACGGAATTCTCTTGCAAGTTTCCTTCATACCTGAAGCCATTTCCATTTCTGAG CTCTCTGATGAAGACTTCACAGAGAAAGAATGCGAGGATTTGAAGCAAAAAGTGGAAGACAGCAAGCTTCAAAAGTTGAC TGTTAAGGAGCTTCAAGAAAAGGCTGAAATTCTTCATGAGGATATAACAAAGCATCGGATTGCAACACGCCTAGTCCATC TGCAAAATCAAATTGACCGTGCAAATCTCACAGGACGAGGAAGAGACAAGATGAAATTGATAGATGAAAGGGAAAATCTT AAAAAACCATGTACACAAGAAAAACTGTTGAAGAGTGTGCCATCAGTTTCCCCTGAGCTTATTGAAGCAAAATACATTGA GTCTGATGAAGATTAG 

Protein sequence (LotjaGi1g1v0784500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANNTGNDAKGKFPEKEEIEDVCFVCKDGGKLIVCDYENCGKVYHPDCLNKEDSFFDNVDYWVCDRHYCCDCKKTPEFYC LGCPKSMCRKCFGDSDFLILKGIKGLCFYCFQQVEIILFNLEYDAYGNKISMDDKETYEYFFKAYWEGVRVKEGFKNGVN SSALPNCSKSRSSLCSEGEEEKQNDSRPSDSNGDHTSKNTPTKRKRHNYGKSKSFVLGRNCSEGEEETQNESGSSDSDGD HSRKNKPTKRRYNSRKRKSFLLSEGEEERQNESRSSDSDGDHSGKNKSTKRRYNSRKKKSFLPNRNCSEGEEEKQNDLRS SDSNGGKNKPAKQKRNNVVEFVGWGSKPLVSFLESIGKFETERMAIWDVKKIILDYIKEKNLVHPGNGSKFLPDEILFPI FGKKVMAKSQVSSTLEKHIVEKVDDSARNTKDDQNGNCSKDKNHRAQTVSSGSKLSGLIGKSLLKKGDIYIKYSCFAAII AKNIKLVYLKQSLVMKFSEQPESFKGKVVGTFVRAKVNSNDHKPMKSYNLVRVIGVVHDEVHNGILLQVSFIPEAISISE LSDEDFTEKECEDLKQKVEDSKLQKLTVKELQEKAEILHEDITKHRIATRLVHLQNQIDRANLTGRGRDKMKLIDERENL KKPCTQEKLLKSVPSVSPELIEAKYIESDED 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 7 114 108 1.1E-19
PANTHER 10 669 660 1.1E-175
PANTHER 10 669 660 1.1E-175
SUPERFAMILY 16 75 60 5.09E-7
ProSiteProfiles 20 86 67 8.556
SMART 22 68 47 2.6E-8
CDD 22 67 46 1.43294E-15
ProSitePatterns 23 83 61 -
MobiDBLite 178 192 15 -
MobiDBLite 178 334 157 -
MobiDBLite 257 288 32 -
MobiDBLite 302 320 19 -
Gene3D 330 429 100 1.6E-24
SUPERFAMILY 335 422 88 1.61E-16
CDD 344 419 76 5.20455E-9
Pfam 352 419 68 4.3E-7
MobiDBLite 426 449 24 -
MobiDBLite 426 440 15 -
ProSiteProfiles 478 603 126 24.963
SMART 478 580 103 1.6E-17
SUPERFAMILY 479 601 123 1.44E-18
Gene3D 479 600 122 5.7E-12
Pfam 483 578 96 1.0E-12
Coils 564 584 21 -
Coils 588 608 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0784500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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