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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0551900 |
| Transcript ID | LotjaGi1g1v0551900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycine--tRNA ligase; TAIR: AT1G29880.1 glycyl-tRNA synthetase / glycine-tRNA ligase; Swiss-Prot: sp|O23627|SYGM1_ARATH Glycine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A072U6L4|A0A072U6L4_MEDTR Glycyl-tRNA synthetase/glycine-tRNA ligase; Found in the gene: LotjaGi1g1v0551900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108326725..108331427) extracted from Lotus japonicus Gifu genome v1.2.
GGAGTTTTTGAATACCATAATCAAAATCAATTGATGAAGTCTATACAAACATGTTGCTATTTTTGGACAGGTGAAAACAT GCAGAGAAATAGCCCAAGTGGAATTTGGAGACAAGCCCAAGCCCAAGCCCAGGCCCAGGCCCAGGCCCAGGATCAGTAAG CGCGTGGATTCCACCATGTAACTAATGTATGAACACTAGCAGTAACTCCTCATCACTAGGGTAGTGAACACAAAACAACA ACACTGAGAGTGAGTGAGTCACCGTTATAAATTTTATGCTTCTTCACCAATTTTTCAAACTCAGAACCATAGCCAGAAAT TCCCAATCTCCTTTTTCATCTCTTTCAATTTCACTTTCTTCATCTTCTCCCATGGCCGCCGCCGCCGCATCCTCCGAAGA TTCGCTCCGCAAAGCCCTCGCCGACAAGCAATCTGCCGTCGACGCCCAGGGCAACGCCGTTCGCGCTCTCAAGGCCGCAT CCGCCGCCAAGCCCGACATCGACGCCGCCATCGCAGCTCTCAACGCTCTCAAGCTCGAGAAGTCCTCCATCGAACGCTCC CTCCAGTCTATCCTCTCTGTTGCCGACACCCGAGAAAGCTTCCGCCATGCTGTGACCAATACCCTCGAACGCCGCTTCTT CTACATCCCCACTGCCAAAATCTACGGCGGCGTTGCTGGTCTGTACGACTACGGTCCTCCTGGTTGCGATGTCAAGCTCA ACGTCCTCTCCTTCTGGCGTAAGGTAAGCTCGCCGTGCCCTTTAGGCTGATTGCATGTTTGGAAATCTTTCAACAATAGA TTCTTCTGGCTTATGGGTTTGAGAATTGATTCTGCGGAATCTTATAGCTTAGCATGATAGAATAACTTGTGGAAATAGCT TCCAAACTTAGTATAACTTACTGCTCGGATTAGATTATGGATACTTTTAGAAAGGTTTTTTCTCAGTGTAGGGACTAATG TGAAGATTGACGGTGTAGTGTTATCTCTGATAGCCAATGATGTTGTTGTTGTGTGCTGATTTTTGGTTAGGGTTTTGTGT TTCTGCAGTCGAGTAAACACCACTAATGTCGAATTAGTAAGAGATATGAGGATTATTTACAAGAACAAATGTAGAATTAT TCGACTAATGTGATTGACTGATGCATATTTCTAGGGTTAATGAATAATCTAGGTTTTTTCTTGCGTAGGGAGTTATATGA AGATTGGGGGTTTAGACTTTCGTGTTATCTCAGATGGTCAATGATGACGTTTTTTATGTTTTTTTTTTCCGCAGCATTTC GTTAGGGAGGAGCAAATGTTGGAGATGGACTGTCCCTGCGTGACGCCAGAGGAAGTGCTGAAGGCGTCCGGCCATGTTGA GAAGTTCACTGATCTCATGGTGAAGGACACCAAGACTAACAATTGCTTCCGTGCCGATCACTTGCTCAAGGACTATTGTA ATGAAAAGCTCCAGAAGGACCTTACATTGTCTCCTGAAAAGGTCGCGGAGCTCAAGAATGTGCTGGCCTTGTTGGATGAT TTCTCTCCTGAAGAGCTCGGCGCTAAGATTAAGGAGTATGGGATCACTGCCCCTGACACCCAGAATCCCCTCTCTGATCC TTACCCTTTCAATTTGATGTTCCAAACTAAAATTGGTCCTTCTGGCTTGCAGACTGGGTTGGTAACTTTTTTCCTCCTTT ATGGTTTATGTCCTGTGGTGGTGATGATGATGTTTTGATGTAAATAAGATAATTATAGTATCGTGTAATTATCATGATCA GAAATATCATAAATCTTTGTATATATTGATCTACAGAATAGTTTCACTGTATAGTTTAGACACATCAAATTCACTCAGTG TCTCTGGATATATTCTTCTTTGTGGTTTTTGTCTGTGATGATGAGATAGATGGGCATTGAACACAAGCTAAAGTCCTTTT TCAACTGTGGCAGGTATTTGCGTCCTGAAACTGCACAGGGCATATTTGTCAACTTCAGGGACTTGTATTATTGCAATGGA AACAAGCTACCTTTTGCTGCTGCCCAAGTTGGGCAAGCTTTTAGAAATGAGGTTTGTGATGCTTGTCTTGTTTTTGTTTG AACTTGCTCTCATTATTTTTTTTGGGGGAATCAGCTCTAGTTTTTTTTTTGTATAGATTGCTCCTCGTCAAGGCCTTCTC AGAGTTCGAGAATTCACACTGGCAGAAATTGAGCACTTTGTTGATCCAGAAGACAAGTCCCATCCAAAGTTCGCAGAAGT TGCTGACTTGGAGTTTTTAATGTTCCCAAGGGAGGAACAAGTGTCTGGTCAGTCTGCAAAGCGAATTCGTTTGGGTGAAG CTGTTTCCAAGGTCAGTATGAACCATATCCACACTCCCTTATATTCACTGACCACTCTTTACGACATGTTATGATTCTTT TCTATTTTCACTCTGGAATTTGTTCAGGGTATTGTCAATAATGAGACTCTTGGTTATTTCATCGGGAGAGTATATCTTTT CTTGACGCGTCTTGGTATTGACAAAGACCGCTTAAGATTTAGGCAACATCTTGCCAATGAGATGGCCCATTATGCTGCTG ACTGCTGGGATGCGGAGATCGAGTGTTCCTATGGTTGGATTGAGTGTGTTGGCATTGCTGATAGATCTGCATATGATTTG CGTGCTCACTCGGTAATGATTCTCGTTCAACATGCTCATTTTGATAACTTCAATGAAACAATACAGCACTATTCTTAAGG GTGAATTGTCCAATAGAATAATTCAAATTGGTTTCCTTACATATGAGTACCAAAAACAACTTAGGATATTCCAATTTTGC AATGTGAGGTCTTAGGTGTACCATGTTGGCATGTTCTTATAATGATGTTGTATTTGATGCCTCAGGAGAAAAGCAAGGTT GCACTTGTGGCTCAGGAAAAATTTCTAGAACCCAAGGAAGTGGAGGTATTGGTTATCTTAATGCAGATGGTTTTGATTTA TTGATGGATATACAATTATACATGAATGGTCTTCATAACTTTATTCACAATCAAGTCTCTTCTCACCATTGATTAATTTG GTGTATGAATTCTTTCAGAAATTAGTTATAACTCCAAGTAAGAAAGAGATAGGTCTAGCATTTAAGGGGGAACAGAAGAA GGTGCTTGAAGCACTTGAGGTAATTGATGGTGTGTAATTTATTTGGTGTTCTGTATAGAAAGAGCTAGTTGCATTAATTT TGAGATATGAGATCTTTTCTGGCAGGCAATGCGTGAGAAAGAAGCTTTGGATATGAAGGCTGCTCTGGAATCAAAAGGGG AGGTGGAGTTTGAAGTGTGTCAGCTTAAGAAAACTGTGACCATTAATAAGAAAATGGTGACGATTCAAAAGGAGAAAAAG ATAGAGCATCAGCGAGTTTTTACACCATCTGTGATTGAACCATCCTTTGGCATTGGAAGGATAATTTATTGCCTCTATGA GCACAGTTTCTACATGAGACCAAGTAAAGCTGGAGATGAAGAGTTACGTGTATTTCGCTTCCCTGCACTAGTAGCTCCTA TTAAGTGCACAGTGTTCCCTCTGGTTCAGAATCAGACATTTGAAGCAGTTTCTAAACTCATTTCCAAGTCATTGACCGCA GCTGATGTTTCACATAAGGTTGACATTACAGGTATGTTGATAAAATCAAAGCTCTCATTTAAGTGCATGTCTAGGGATCT ATATCAAACTCAAGTGCATGAGAATACTGGCCTTATAAATCCTTGAAAATAAATGCTTTGACTGAGAAGTGAGAACAATG TTATATTTGAAAGGTTTCAGGGAAGATTTCCCCCCCTATGCAGTAGTCTTTTCATTTAGCTAGGTGCAAATCTGATCTTT CGACTTTTCTATTCAAATGTTTATTTCTTGTTATTATTGACTGATCTCATGTTTGGATCAGGTTCCTTTTCCTTATAATC AGTTCTGGCCCCCCTAAGTTACTCCCAAAAGCTTCTGATTTTAGCTTTAGAATCAATTGTAGAACTTTCAAGCATGCATT GTCTAAAACTCTAAATGGGTTAAACTATATGTTGGAAGATTGTTGACATTGTCTTTCATCCATTATTTTGTTTGAGAGAT GGATTTATTTTGTTTGAGAGATGGATTTATCTCATTTTGGTTATATCTTTTGAAATGCTAATAGGTACATCTATTGGAAA ACGATACGCAAGAACAGATGAACTTGGTGTGCCCTTTGCTATCACTGTGGATTCAGAATCATCAGTGACTATTCGAGAGA GGGACAGCAAGGATCAAGTGCGTGTTGATGTGGAAAAAGCTGCCTCTGTTGTCAAGGAGTTAACTGAGGGTCAGAGCACA TGGGCAGATGTGTGGTCAAATTTTCCCCACCATTCCTCTGCAGCTGCAGAAGATTGAATTTTAATCAAATCATCATGTTG ATTTATTGACCTTGTTATGGTTTTCAGATACAAAATTTTTGTGTGATGTTATGAGCAATGAATTGAACTACACGGATATT ACTAATCATCAACTAGATACCTTTTTTATTTGAATGAAGTTTATCACATATGGCCAATATTATACGCTTATTTTGCAGTT GTCGGAAATAGTATAGTCAGAGATTGGACAATATTTTGTTTAGATCTCAATTCCACCCACACGGAGTAAAAGAGAAAGAA ATGAGAAATATAATTAGTGATGTGATAAGAAAAGAAAATATAAGAGAAAGAGAAGGTGGTAGG
CDS sequence (LotjaGi1g1v0551900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTTCACCAATTTTTCAAACTCAGAACCATAGCCAGAAATTCCCAATCTCCTTTTTCATCTCTTTCAATTTCACT TTCTTCATCTTCTCCCATGGCCGCCGCCGCCGCATCCTCCGAAGATTCGCTCCGCAAAGCCCTCGCCGACAAGCAATCTG CCGTCGACGCCCAGGGCAACGCCGTTCGCGCTCTCAAGGCCGCATCCGCCGCCAAGCCCGACATCGACGCCGCCATCGCA GCTCTCAACGCTCTCAAGCTCGAGAAGTCCTCCATCGAACGCTCCCTCCAGTCTATCCTCTCTGTTGCCGACACCCGAGA AAGCTTCCGCCATGCTGTGACCAATACCCTCGAACGCCGCTTCTTCTACATCCCCACTGCCAAAATCTACGGCGGCGTTG CTGGTCTGTACGACTACGGTCCTCCTGGTTGCGATGTCAAGCTCAACGTCCTCTCCTTCTGGCGTAAGCATTTCGTTAGG GAGGAGCAAATGTTGGAGATGGACTGTCCCTGCGTGACGCCAGAGGAAGTGCTGAAGGCGTCCGGCCATGTTGAGAAGTT CACTGATCTCATGGTGAAGGACACCAAGACTAACAATTGCTTCCGTGCCGATCACTTGCTCAAGGACTATTGTAATGAAA AGCTCCAGAAGGACCTTACATTGTCTCCTGAAAAGGTCGCGGAGCTCAAGAATGTGCTGGCCTTGTTGGATGATTTCTCT CCTGAAGAGCTCGGCGCTAAGATTAAGGAGTATGGGATCACTGCCCCTGACACCCAGAATCCCCTCTCTGATCCTTACCC TTTCAATTTGATGTTCCAAACTAAAATTGGTCCTTCTGGCTTGCAGACTGGGTATTTGCGTCCTGAAACTGCACAGGGCA TATTTGTCAACTTCAGGGACTTGTATTATTGCAATGGAAACAAGCTACCTTTTGCTGCTGCCCAAGTTGGGCAAGCTTTT AGAAATGAGATTGCTCCTCGTCAAGGCCTTCTCAGAGTTCGAGAATTCACACTGGCAGAAATTGAGCACTTTGTTGATCC AGAAGACAAGTCCCATCCAAAGTTCGCAGAAGTTGCTGACTTGGAGTTTTTAATGTTCCCAAGGGAGGAACAAGTGTCTG GTCAGTCTGCAAAGCGAATTCGTTTGGGTGAAGCTGTTTCCAAGGGTATTGTCAATAATGAGACTCTTGGTTATTTCATC GGGAGAGTATATCTTTTCTTGACGCGTCTTGGTATTGACAAAGACCGCTTAAGATTTAGGCAACATCTTGCCAATGAGAT GGCCCATTATGCTGCTGACTGCTGGGATGCGGAGATCGAGTGTTCCTATGGTTGGATTGAGTGTGTTGGCATTGCTGATA GATCTGCATATGATTTGCGTGCTCACTCGGAGAAAAGCAAGGTTGCACTTGTGGCTCAGGAAAAATTTCTAGAACCCAAG GAAGTGGAGAAATTAGTTATAACTCCAAGTAAGAAAGAGATAGGTCTAGCATTTAAGGGGGAACAGAAGAAGGTGCTTGA AGCACTTGAGGCAATGCGTGAGAAAGAAGCTTTGGATATGAAGGCTGCTCTGGAATCAAAAGGGGAGGTGGAGTTTGAAG TGTGTCAGCTTAAGAAAACTGTGACCATTAATAAGAAAATGGTGACGATTCAAAAGGAGAAAAAGATAGAGCATCAGCGA GTTTTTACACCATCTGTGATTGAACCATCCTTTGGCATTGGAAGGATAATTTATTGCCTCTATGAGCACAGTTTCTACAT GAGACCAAGTAAAGCTGGAGATGAAGAGTTACGTGTATTTCGCTTCCCTGCACTAGTAGCTCCTATTAAGTGCACAGTGT TCCCTCTGGTTCAGAATCAGACATTTGAAGCAGTTTCTAAACTCATTTCCAAGTCATTGACCGCAGCTGATGTTTCACAT AAGGTTGACATTACAGGTACATCTATTGGAAAACGATACGCAAGAACAGATGAACTTGGTGTGCCCTTTGCTATCACTGT GGATTCAGAATCATCAGTGACTATTCGAGAGAGGGACAGCAAGGATCAAGTGCGTGTTGATGTGGAAAAAGCTGCCTCTG TTGTCAAGGAGTTAACTGAGGGTCAGAGCACATGGGCAGATGTGTGGTCAAATTTTCCCCACCATTCCTCTGCAGCTGCA GAAGATTGA
Protein sequence (LotjaGi1g1v0551900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLHQFFKLRTIARNSQSPFSSLSISLSSSSPMAAAAASSEDSLRKALADKQSAVDAQGNAVRALKAASAAKPDIDAAIA ALNALKLEKSSIERSLQSILSVADTRESFRHAVTNTLERRFFYIPTAKIYGGVAGLYDYGPPGCDVKLNVLSFWRKHFVR EEQMLEMDCPCVTPEEVLKASGHVEKFTDLMVKDTKTNNCFRADHLLKDYCNEKLQKDLTLSPEKVAELKNVLALLDDFS PEELGAKIKEYGITAPDTQNPLSDPYPFNLMFQTKIGPSGLQTGYLRPETAQGIFVNFRDLYYCNGNKLPFAAAQVGQAF RNEIAPRQGLLRVREFTLAEIEHFVDPEDKSHPKFAEVADLEFLMFPREEQVSGQSAKRIRLGEAVSKGIVNNETLGYFI GRVYLFLTRLGIDKDRLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLRAHSEKSKVALVAQEKFLEPK EVEKLVITPSKKEIGLAFKGEQKKVLEALEAMREKEALDMKAALESKGEVEFEVCQLKKTVTINKKMVTIQKEKKIEHQR VFTPSVIEPSFGIGRIIYCLYEHSFYMRPSKAGDEELRVFRFPALVAPIKCTVFPLVQNQTFEAVSKLISKSLTAADVSH KVDITGTSIGKRYARTDELGVPFAITVDSESSVTIRERDSKDQVRVDVEKAASVVKELTEGQSTWADVWSNFPHHSSAAA ED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 37 | 37 | - | – | |
| Phobius | 20 | 28 | 9 | - | – | |
| PANTHER | 29 | 722 | 694 | 0.0 | ||
| Phobius | 29 | 40 | 12 | - | – | |
| PANTHER | 29 | 722 | 694 | 0.0 | – | |
| Gene3D | 31 | 98 | 68 | 2.6E-8 | – | |
| Phobius | 41 | 722 | 682 | - | – | |
| ProSiteProfiles | 47 | 103 | 57 | 10.789 | ||
| SUPERFAMILY | 50 | 92 | 43 | 9.42E-7 | ||
| SMART | 51 | 107 | 57 | 6.3E-7 | ||
| Pfam | 53 | 88 | 36 | 2.0E-9 | ||
| TIGRFAM | 112 | 698 | 587 | 5.3E-207 | ||
| SUPERFAMILY | 112 | 613 | 502 | 2.28E-119 | – | |
| CDD | 115 | 459 | 345 | 4.70552E-111 | ||
| Gene3D | 116 | 590 | 475 | 3.7E-220 | – | |
| PRINTS | 129 | 143 | 15 | 6.0E-58 | ||
| Gene3D | 187 | 271 | 85 | 3.7E-220 | – | |
| ProSiteProfiles | 248 | 589 | 342 | 11.949 | ||
| PRINTS | 266 | 278 | 13 | 6.0E-58 | ||
| PRINTS | 285 | 302 | 18 | 6.0E-58 | ||
| Pfam | 285 | 583 | 299 | 6.7E-10 | ||
| PRINTS | 317 | 334 | 18 | 6.0E-58 | ||
| PRINTS | 334 | 344 | 11 | 6.0E-58 | ||
| Gene3D | 486 | 555 | 70 | 3.7E-220 | – | |
| PRINTS | 564 | 576 | 13 | 6.0E-58 | ||
| CDD | 580 | 700 | 121 | 1.72291E-47 | – | |
| SUPERFAMILY | 599 | 714 | 116 | 2.45E-27 | – | |
| Gene3D | 608 | 718 | 111 | 6.0E-37 | ||
| Pfam | 610 | 697 | 88 | 1.2E-17 | ||
| PRINTS | 649 | 668 | 20 | 6.0E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Glycine-tRNA ligase activity | Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Glycyl-tRNA aminoacylation | The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. The glycyll-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a glycine-accepting tRNA. |
Expression pattern of LotjaGi1g1v0551900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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