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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:2.60.210.10
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 102 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008999.1
n.a. E3 ubiquitin ligase-like protein, partial [Lotus japonicus] gi|379055947|emb|CCG06555.1| chr0 3671095 3674611 +
2 domain predictions
1 GO term
Lj0g3v0119089.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 [Vitis vinifera] gi|225436095|ref|XP_002277700.1| chr0 52698217 52699246 -
2 domain predictions
1 GO term
Lj0g3v0202779.1
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr0 100402876 100403909 -
2 domain predictions
1 GO term
Lj0g3v0237689.1
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr0 123232889 123234089 -
2 domain predictions
1 GO term
Lj0g3v0261919.1
n.a. Ubiquitin-specific protease 12 [Theobroma cacao] gi|508717751|gb|EOY09648.1| chr0 135723523 135724281 -
2 domain predictions
1 GO term
Lj0g3v0301399.2
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cicer arietinum] gi|502137764|ref|XP_004503177.1| chr0 156633652 156635560 +
2 domain predictions
1 GO term
Lj0g3v0304119.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Glycine max] gi|356504912|ref|XP_003521238.1| chr0 158413103 158417180 -
2 domain predictions
1 GO term
Lj0g3v0306819.1
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr0 160134159 160139832 -
2 domain predictions
1 GO term
Lj0g3v0306819.2
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr0 160134159 160139837 -
2 domain predictions
1 GO term
Lj0g3v0306819.3
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr0 160134159 160139832 -
2 domain predictions
1 GO term
Lj0g3v0316759.1
n.a. PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Cicer arietinum] gi|502156841|ref|XP_004510666.1| chr0 165472501 165475522 -
2 domain predictions
1 GO term
Lj0g3v0316759.2
n.a. PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max] gi|356573229|ref|XP_003554765.1| chr0 165472501 165475552 -
2 domain predictions
1 GO term
Lj0g3v0322529.1
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr0 168453669 168455534 -
2 domain predictions
1 GO term
Lj0g3v0324189.1
n.a. E3 ubiquitin ligase-like protein, partial [Lotus japonicus] gi|379055947|emb|CCG06555.1| chr0 169395585 169399676 -
2 domain predictions
1 GO term
Lj0g3v0324189.2
n.a. E3 ubiquitin ligase-like protein, partial [Lotus japonicus] gi|379055947|emb|CCG06555.1| chr0 169396225 169399676 -
2 domain predictions
1 GO term
Lj0g3v0341609.1
n.a. PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Cicer arietinum] gi|502183151|ref|XP_004517074.1| chr0 179055823 179061734 -
2 domain predictions
1 GO term
Lj1g3v0984440.1
n.a. E3 ubiquitin ligase [Lotus japonicus] gi|379055945|emb|CCG06554.1| chr1 12524333 12528100 -
2 domain predictions
1 GO term
Lj1g3v1878490.1
n.a. CGS1 mRNA stability [Medicago truncatula] gi|357466147|ref|XP_003603358.1| chr1 22545809 22555271 -
2 domain predictions
1 GO term
Lj1g3v3979310.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] gi|356571773|ref|XP_003554047.1| chr1 47258558 47264774 +
2 domain predictions
1 GO term
Lj1g3v4372170.1
n.a. E3 ubiquitin ligase-like protein [Lotus japonicus] gi|379055941|emb|CCG06552.1| chr1 51204857 51209532 +
2 domain predictions
1 GO term
Lj1g3v4763730.1
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr1 57138755 57143196 -
2 domain predictions
1 GO term
Lj1g3v4912200.1
n.a. PREDICTED: speckle-type POZ protein-like A-like [Cicer arietinum] gi|502112515|ref|XP_004494356.1| chr1 59451083 59452994 +
2 domain predictions
1 GO term
Lj1g3v5034850.1
n.a. E3 ubiquitin ligase [Lotus japonicus] gi|379055939|emb|CCG06551.1| chr1 61557698 61561164 -
2 domain predictions
1 GO term
Lj2g3v2905020.1
n.a. CM0545.290.nc [Lotus japonicus] gi|164605535|dbj|BAF98601.1| chr2 38020719 38035844 -
2 domain predictions
1 GO term
Lj2g3v2926360.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] gi|356499261|ref|XP_003518460.1| chr2 38226028 38230243 +
2 domain predictions
1 GO term
Lj3g3v0510910.1
n.a. Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|357512847|ref|XP_003626712.1| chr3 5887193 5891086 +
2 domain predictions
1 GO term
Lj5g3v0962400.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Glycine max] gi|356500220|ref|XP_003518931.1| chr5 14561733 14565553 +
2 domain predictions
1 GO term
Lj5g3v1697410.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera] gi|359487017|ref|XP_002263912.2| chr5 24261319 24282548 -
2 domain predictions
1 GO term
Lj5g3v2014040.1
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr5 28461436 28463915 -
2 domain predictions
1 GO term
Lj6g3v0056740.1
n.a. PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max] gi|356575249|ref|XP_003555754.1| chr6 872896 887156 +
2 domain predictions
1 GO term
Lj6g3v1038860.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform X2 [Cicer arietinum] gi|502134175|ref|XP_004502026.1| chr6 11661004 11690874 +
2 domain predictions
1 GO term
Lj6g3v1480340.1
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr6 17297447 17298647 -
2 domain predictions
1 GO term
Lj6g3v1480350.1
n.a. n.a. chr6 17300015 17301247 -
2 domain predictions
1 GO term
Lj6g3v1493510.4
n.a. Ubiquitin carboxyl-terminal hydrolase family protein [Medicago truncatula] gi|357513213|ref|XP_003626895.1| chr6 17355859 17357198 -
2 domain predictions
1 GO term
LotjaGi1g1v0059200.1
n.a. BTB-POZ and MATH domain protein; TAIR: AT3G03740.1 BTB-POZ and MATH domain 4; Swiss-Prot: sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4; TrEMBL-Plants: tr|K7KB30|K7KB30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059200 LjG1.1_chr1 8289166 8294132 -
2 domain predictions
1 GO term
LotjaGi1g1v0061200.1
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8563607 8579364 +
2 domain predictions
1 GO term
LotjaGi1g1v0061200.2
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564188 8578405 +
2 domain predictions
1 GO term
LotjaGi1g1v0061200.3
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564191 8578405 +
2 domain predictions
1 GO term
LotjaGi1g1v0061200.4
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564191 8578405 +
2 domain predictions
1 GO term
LotjaGi1g1v0061200.5
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564636 8578405 +
2 domain predictions
1 GO term
LotjaGi1g1v0061200.6
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G11910.1 ubiquitin-specific protease 13; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564697 8578405 +
2 domain predictions
1 GO term
LotjaGi1g1v0061200.7
n.a. Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|B0BLB2|B0BLB2_LOTJA CM0545.290.nc protein; Found in the gene: LotjaGi1g1v0061200 LjG1.1_chr1 8564765 8578405 +
2 domain predictions
1 GO term
LotjaGi1g1v0278800.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr|H8WVC4|H8WVC4_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0278800 LjG1.1_chr1 68163116 68173545 -
2 domain predictions
1 GO term
LotjaGi1g1v0278800.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr|H8WVC4|H8WVC4_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0278800 LjG1.1_chr1 68168957 68171821 -
2 domain predictions
1 GO term
LotjaGi1g1v0278800.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr|H8WVC4|H8WVC4_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0278800 LjG1.1_chr1 68168957 68172033 -
2 domain predictions
1 GO term
LotjaGi1g1v0285800.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr|H8WVC6|H8WVC6_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0285800 LjG1.1_chr1 69437742 69442129 -
2 domain predictions
1 GO term
LotjaGi1g1v0285800.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT5G53360.2 TRAF-like superfamily protein; Swiss-Prot: sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5; TrEMBL-Plants: tr|A0A1D6BPI0|A0A1D6BPI0_WHEAT E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0285800 LjG1.1_chr1 69438419 69441675 -
2 domain predictions
1 GO term
LotjaGi1g1v0285800.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr|H8WVC6|H8WVC6_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi1g1v0285800 LjG1.1_chr1 69438419 69441721 -
2 domain predictions
1 GO term
LotjaGi1g1v0382100.1
n.a. Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT2G25320.1 TRAF-like family protein; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|V7AXN6|V7AXN6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0382100 LjG1.1_chr1 86537506 86547174 -
2 domain predictions
1 GO term
LotjaGi1g1v0382100.2
n.a. Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT2G25320.1 TRAF-like family protein; Swiss-Prot: sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13; TrEMBL-Plants: tr|I1JUB3|I1JUB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0382100 LjG1.1_chr1 86537966 86546871 -
2 domain predictions
1 GO term