Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj1g3v0827060 |
| Transcript ID | Lj1g3v0827060.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: replication factor C subunit 5-like [Glycine max] gi|356515902|ref|XP_003526636.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 358 | 332 | 6.10E-185 | – | |
| PANTHER | 27 | 358 | 332 | 6.10E-185 | – | |
| SUPERFAMILY | 43 | 260 | 218 | 9.89E-48 | ||
| Gene3D | 44 | 202 | 159 | 1.60E-59 | ||
| CDD | 74 | 201 | 128 | 4.66E-20 | – | |
| SMART | 75 | 205 | 131 | 4.60E-11 | ||
| Pfam | 79 | 200 | 122 | 4.40E-16 | ||
| Gene3D | 206 | 269 | 64 | 9.90E-24 | – | |
| SUPERFAMILY | 267 | 356 | 90 | 1.40E-21 | ||
| Pfam | 267 | 352 | 86 | 6.00E-20 | ||
| Gene3D | 270 | 363 | 94 | 4.40E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of Lj1g3v0827060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj1g3v0827060.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.