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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0111100 |
Transcript ID | LotjaGi2g1v0111100.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:39845933..39851896) extracted from Lotus japonicus Gifu genome v1.2.
GAATAAACTATTTAAGTGTTTAATACTGAAAAATAAAATACCAAAGTGAGTGTCCTAGATAAAAAGCCTCTTCTTTCCCG CCACAGCTATTAGGGTATGTGCTCTGTTCTCCTCATCGAGCGATAGAGTGAGTGTGGAGTGTGTGCAAGGTTGAAGAAAA AGGATGTTGTGGGTGGACAAGTACCGTCCCAAAACCCTAGATCAGGTTATGGTCCACGACGATGTCGCTCAAAACCTCAA GAAATTGGTACTCTCCATCTCTCTCTCTACCCTAATCAACTTTGTGTTTGGTTTAATTTTTTTCAATTTTAATCACTTTT TGTTTCGATTATTCGTGTTGGTGACTCTGTTGTGGACAGGTTACGGAACAGGATTGTCCCCATTTGCTATTCTATGGTCC ATCTGGTTCTGGCAAGAAAACCCTAATCATGGCGCTTCTCCGCCAAATGTTCGGAACTGCTGCCGAAAAGGTTCTTTTTT TTCATCTTTGTTTTCAACTTTGTAACTATTGAGTGTGACTGAAAAAGTAAACTGAGTGTGTTTGTTTCAGAGACAAATTT AATAAAAATGTGTATGAGTAATGTAGTTTACTTTTCGTTTATTCCGACTAGCTGGGATCGGCTACATGTATTAAACCATT CCATTTTGCTATATATTAAGTTTGACGGGAAATTGTTTAGCTTTAAATTTCTCTTAATAGAATTTAAGATAATATTATAT TAATTCTAGTAAGGTTTATTGTCTAATATTTAATCGTTATTTTAATGTATCTTGGGTTTCTGTTTGGTTTTCTCGTGTTA GAATTGCGCTTCTTCTCGTCTAATCTTCGTGCCCTATACTTTTGGTTCCTTTCCTAAATGGTCTTTGTTGATGTTGCAGG TGAAGGTGGAAAATAGGACGTGGAAAGTGGATGTAAGCTTCATTCTTTCTCATGCGGTGTTCTTCTTTTTGTTGTTTTGA CTTATCAGGAATACCCTTACGTTCGCATAGTTTAGGGTGTTTTTTTATATGATTTTACTGGTACCTTAAGTAATGACTAG TAATGAGTGTGGAGTATGTAACTGATTATTTGCCACTAGTTGCCAAGCAAGAGGTACTGGTTACCTGGGGAAAATGAAGG AGGATGCTGGCGAAACATTTAGAATTGTTTGGTTGGAGGAGAACGGAGGGGAGGGGAGGGGAGGGGAGGGATTTTTAAAA TTTGATTTTGTTTGGTTCAAACTTTAGGAGGGGAGGGGAGGGAAATGGAGGGGAGCAAAATCCCTCCAACCTCAATTTTT TGTTCCCCCAAAAGTGGGGGAATTAAGAGGGGAAATAAATTTCGGACAAAAATAACCCTGCACAAATTTAAAAATTCCAA TTTTGTATTCTAGGGCTTCCCCTCTACAATTCACATCTTTGGCTAATGACTAGGGAGGTTCCAACTTCCAAGCCACCTGT TGTGGAGGAAGACAAGGAGTTCCTGGAGAAGAAAGAAAGGATTCATGAACTTGAACAGTAATCAATGGTGCATCTCAACG GGTGTTATTTTCTTGGGGTTTAAATGATGTTTTTTTGCTTTTTAGTGAGAATTTCTCTTCAATTGAATAAATGTGATATC CATAACCAAGATGAAAAGCCTGGTAGTGTTGGTGCCGTTTTTGCAACCTTGTTTCGTGTTATAAACTAGAATGTTTTTGC TTTTGTATGATTGTTCATTGCTTTACATGCGTTTGGGTGGAATACATGAACTCTTGCAGAATTCGTACTTGTGGGGAATG AGGAATGGTTGAGTCATGAGCGTTGAGTGGTTTGGATTCACGAAACTGTTAAGAATCAGAGTAATTGTTTTTTTTTTTTT TTAAAAGAGAATCAGAGTAATTGTTGATGAAGAAGGATGTATGTTATATTGTGTTGTTAGATTCAAGAAAAAATATAAAA GGATATAAAAGTGATTTTAATTATAAAATCTCTTCCCTCTCATGAACTAAATAAAAATAAGTTTGTTTCCCCCCCCTCCC CTCCTATGAACCAAACGTAATAAGTATAAAAATCCCTCCCCTCTCTTCCCCTCCCCTCCCTTCCCCTCCATTAAATGTTT TGTTGAGACTTGAGATAGAAAGTTCCATCTGAAGTAGCTAATTTTGTCAAATATTTTGCCAGCGGGATATGACTTGGAGA ATATCAAAGGCCAATTCACAACATGCAAACTTTTTTAGTTTTTCCTTTGGTTACAAATATCATGGTCTTAAATCTTGATT CTTGAGAATGTCCATACCATGTTCAATTCCCGTAGGAGCACATTTGTTCAACTTTGTGAATTATCCTCGGTGCTGCTCTT GAGGCACAAGCGTGAATTTTATTGATTTCTCATAGGTTTGTTATGTACAGTAAACTGAAGCAGTATTTTTATTTTATTTT GAAGTTCTTTGAAATTGGTTTCAGGCTGGAAGTAGATCAATTGATTTAGAGCTGACAACATTGTCTAGTGCCCATCACAT TGAAATGAGTCCAAGTGATGCAGGCTTTCAGGACAGATATGTTGTTCAAGAAATCATCAAAGAAATGGCTAAGAATAGAC CCATTGATACTAAAGGGAAGAAAGGATTTAAAGGTAACTGGCTATATTTATTTTAACCTTTGTGTTCTTTTAAGCATATA GAAAGCGGAACCTGTGCATGGTCAACAATTAGTTTGGAGTTTTTTTCGTATGTATGTTCTATCTTTTAAATCTTATCTGT GTTTGTAACATTGCATCTTCGATTGTGTAGAATGCTGTTATGTTTGCTAGTGTCTAATTTACTTATCTAATGCATCCTTC TTTTCGTTTTGTAATACCCATGTCAAATAAGTAAGCTCTCCACCTTGGCTTGAAAATCAATGCTAGGATTAGAAGCATTC ACATTTATCTTTTTTGTTATACTTGATTTTTTCAAGCTGGTTTATTTTGTCTGTATCAGTACTAGTGCTTAATGACGTTG ACAAGCTCTCTAGAGAAGCTCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTCTATGT TGCAATAGTTCTTCAAGAGTCACTGAAGCAATCCGCTCCCGTTGTCTAAATATACGAATAAATGCACCAAGTGAAGAACA GGTCAGTTAATTTTTAACATCTACTGATTTGGCCAAGGAAAGAAAGGAATCTGTTTCCGTTCTTGTTTTAAGTTTCTATT AAGTAAAGGGATTTTTAGCTTTGAAACTGTTGTTTTCTCTGGCAGGGTTGTGAGTAGTAAGTAGTTTCCATTTTTCCCTC AGTATTATTTTGCTTGCTTGTTATTTCTTGTAGATAAATTGTGGTCTTACCAGGTGTCATGTTGCTGTTGCAGGCATGAA TGTAGGATAGGTTCATACTTCATAATTAATTTTTGTTATGCATTATTCCTTTTCATGAGTGATCTCATTGTTATAGAGAG GATGGTCTTATGATATATGACTGATAGCATAAAATACGATTAGTTACAAAATATATTATGAAGAGAGAAAGTTGGGTCAG CTCATAATGGAAACTATAAGAGTCTTGTCCTAGGTGGTTTGGAAATATGTGTGGAGAAGATATGTTGAAGGACTGGAGCA TCGATGCGGAGGATACACTAGATGGAGAATAGTCCAATAGCTAGAATATATAACAAACCATTATTAGAAATTTAGGTTTA AATAGCCTGTTAAGGGACTTGATTCATGACAGAATATGTTCTATTTAGCTGCCTCCACCCAGTGGGTATTATTGTGGTTG TTTTTATTCCTCATCATGACAGGATTAAATACTGATTAAGAAACTTGGAGAGGATGTTTGAGTTTTAGATTATAGAACGC TTTTGCAGATGTAATGAAGGACAGCAATATTACTTTCTTAGCAGAGCTTTGGTGGCAAAATCTCTGCTAAGAATCTTACT TGTACTTAATCATCAAATAATTCAAAATATATCTTTGACAATCATTATGATTAGGCCTGGTACTTCTTTGAAAACAAAAA AGGCCTGGAGATCATGTAGTTAGCTTGTTTGTCTCGGATGCTATTCTTTCATTTTTTTTTTCTGGCTCCCGTTGCTGTAA AGGGTATGCCAAAGGTATTCATATTTCATAGGATTTCGTATGTTATGATAATATACGACAGATCAACCTCCACAAAAGAA TACCATACCATTAGACAATATTATATATGCTGATATTGTCTGGCATAAGCATTCTCTAAATTTCATATTCATAATTCATC ATTATTGAATTATTGGAAATCTATGTGGCAGATTGTTGAAGTTATAGAGTTCATTGGTAAGAAAGAAGGGCTGCAAATTC CTTCTGGTTTTGCTGCTCGCATAGCAGAAAAATCAAATCGGAATTTAAGGAGGGCCATATTATCATTTGAGACTTGCCGT GTCCAACAGTAAGCCCCAGAATCTAATTCATTAGTGGATGTGAACCTCAGATGGGTGACTACTGACAACTGTTCCTTTTG CATATTGTTGCCTGTGTTACTCATAGGTATCCTTTCACGAACAGGCAAACAATTCCCCCAATGGACTGGGAGGAATATAT TTCTGAAATAGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTTGCTTTTGATACAGTTTACTATTGTCTGATCT TTCATAATAGAATTTTTTTTGAATATTGAAATTGGTCAGGTTTATAGATATCCTACCCAATTGTTTAGTCAACTAATCTC ATGTTTTAGTTTCTTATTCAGTGATTTAGTGATCTCTGTGGCTTCTGTTCTGTGAAATGCATTTTTCATCTCTCGCTGTC TCATATCTTAGGTTGTTTCAAGTTCGAGGGAAGCTGTATGAGCTTCTAATTAATTGCATTCCCCCAGAGATGATTTTGAA GGTATGTGTGTTCCTTTGCAAATGTCCCTATGTAATTTTTTTGCCTGTCCTTCAATGTTAGCTTTGTTGGCTCAGAGGCT TCTTTTTGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTTTGTCACTGGGCTGCATATTATGTAAGTGCAT TGTTAATATTATATTGTATATAATATAATTCAGAATACGGCAGCTGGAATTGATATGGTGTTCAGGGCTGCTGTATTTGT TTCTCCTAATTTGTTAATTTCTAAGCCTCGACTGTTCTGTGGTTTGTTATGTACCTTCGGTATAAGCATTCGTAAAATAT CCATGTGTTTTTCCCCACACTTATATATGGCCTCATTAACTTGGAATTTCTGAATTAATAGATGAAGATTTTGTCTAGCC ATTTTCTCTTCTTATTTTTCAAGGGTAAGGATTCCCTCTGATTCTTCTTTTCAATCAATACAGGAACATAGGATGCGCCT TGGACAGAAAGCAATTTTTCACATCGAAGGTATATAAACCTGAATGTGTTTGATAGTTAGATTGACATTTACAGCTTATG GATTTGAGTGCTGACCATGGCAAGTTCTTATGGAGACCCTGTCTATATTTATGCAATGTGAATATAAGCTGGGCCTATAG AATATTTCTTGGCAAACTTCTCGTTATTTATTTATTTTTACCCTAACAGGAGGGTTTAGACATAAATTTATTTCTGACAA CCTCTTTTTTTCTTTCGTATGTTTACATTGGCAGCATTTGTGGCTAAGTTCATGAGCGTCTATAAATCCTTTCTCATTGC TACATTCGGCTGAATGTGAACTGAAGATTTGCTTTTTCCATGCTACATGTTTAATGGTTTGTGTACTAGAAATAACTTCG TATATAATGGAGTTTTAACATCTTCCGTGAGTTTTTCTCATGTATGCATGCTGCAACTGCAATGACAGAATTCTGATGTT TCGGTTTGTAAGAGGTTTTATGATTTATTAGATTTTGTGGACTTTGCATGATAAATGGATATTGAATTCCCCACCTTCTC CTCTTCCCCTCTATTGCCATTTGAATACAAATAAAAAAAATGCT
CDS sequence (LotjaGi2g1v0111100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTGGGTGGACAAGTACCGTCCCAAAACCCTAGATCAGGTTATGGTCCACGACGATGTCGCTCAAAACCTCAAGAA ATTGGTTACGGAACAGGATTGTCCCCATTTGCTATTCTATGGTCCATCTGGTTCTGGCAAGAAAACCCTAATCATGGCGC TTCTCCGCCAAATGTTCGGAACTGCTGCCGAAAAGGTGAAGGTGGAAAATAGGACGTGGAAAGTGGATGCTGGAAGTAGA TCAATTGATTTAGAGCTGACAACATTGTCTAGTGCCCATCACATTGAAATGAGTCCAAGTGATGCAGGCTTTCAGGACAG ATATGTTGTTCAAGAAATCATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTAC TAGTGCTTAATGACGTTGACAAGCTCTCTAGAGAAGCTCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTAT TGCAGATTAATTCTATGTTGCAATAGTTCTTCAAGAGTCACTGAAGCAATCCGCTCCCGTTGTCTAAATATACGAATAAA TGCACCAAGTGAAGAACAGATTGTTGAAGTTATAGAGTTCATTGGTAAGAAAGAAGGGCTGCAAATTCCTTCTGGTTTTG CTGCTCGCATAGCAGAAAAATCAAATCGGAATTTAAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTAT CCTTTCACGAACAGGCAAACAATTCCCCCAATGGACTGGGAGGAATATATTTCTGAAATAGCATCTGACATAATGAAGGA ACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGGAAGCTGTATGAGCTTCTAATTAATTGCATTCCCCCAGAGATGATTT TGAAGAGGCTTCTTTTTGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTTTGTCACTGGGCTGCATATTAT GAACATAGGATGCGCCTTGGACAGAAAGCAATTTTTCACATCGAAGCATTTGTGGCTAAGTTCATGAGCGTCTATAAATC CTTTCTCATTGCTACATTCGGCTGA
Protein sequence (LotjaGi2g1v0111100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTAAEKVKVENRTWKVDAGSR SIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAY CRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY PFTNRQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEMILKRLLFELLRKLDAELKHEVCHWAAYY EHRMRLGQKAIFHIEAFVAKFMSVYKSFLIATFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 189 | 189 | 6.7E-54 | – | |
SUPERFAMILY | 2 | 256 | 255 | 1.95E-40 | ||
PANTHER | 2 | 349 | 348 | 4.1E-158 | – | |
PANTHER | 2 | 349 | 348 | 4.1E-158 | – | |
CDD | 19 | 190 | 172 | 1.87924E-9 | – | |
Pfam | 20 | 188 | 169 | 1.8E-11 | – | |
SMART | 33 | 192 | 160 | 6.1E-7 | ||
CDD | 189 | 257 | 69 | 4.18138E-9 | – | |
Gene3D | 190 | 254 | 65 | 4.1E-6 | – | |
SUPERFAMILY | 251 | 346 | 96 | 1.53E-36 | ||
Gene3D | 255 | 346 | 92 | 6.0E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi2g1v0111100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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