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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0221000 |
| Transcript ID | LotjaGi4g1v0221000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor C subunit; TAIR: AT1G63160.1 replication factor C 2; Swiss-Prot: sp|Q9CAM7|RFC2_ARATH Replication factor C subunit 2; TrEMBL-Plants: tr|V7CBL1|V7CBL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0221000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52075365..52079759) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGGTTTGCTTTTTAACTTATTTGCCAAATGCACTTCCCGTGAATGCTCACAGACTTCGATGTCATCTTAGCACAAAT GCGGTTTGTCGTCGATGTGGTGCTGACTCGAAGGACCTTGATCATTTACTCAAGCATTCACATCCAACAATCATGCCAAC GATCGAACTTTTGATCAACCATGGGTAATTGTAGTTTATCTTTTCAATATAAAAAAAATCAAATGAAATAGGAAATGAGA AATGAGAAAAAGAAAAAATATTTATGCCTATAATAAAAGTGGTGAAGGTATAAATCAAGGCAGCGGGACAAATTCCCTCC AAGTTTGAAGTGGTTTTGGTTTGGGCATATAGGGTTTTGCTTCACTGTTCATTGCCGGAACTGAACTGAATCCATGGCAT CCTCATCGTCAACCACCACCAACACCACCGTCGGCTACGACGTCCCATGGGTGGAGAAGTACCGACCCTCCAAGGTCGCC GACATCGTCGGCAACCAAGACGCCGTCTCTCGCCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAACCTCATTCTCTC CGTAATCCCCCTCTCTCTCTCTCTCATCCTTTCTTCACTGACCCTTCAGCATTCCCATTGTTTCAATTTTGCTTCTTCTC TGCCATTTTCAGGGTCCTCCCGGCACCGGCAAAACCACCAGCATTCTCGCCCTCGCACATGAGCTTCTCGGTCCCAATTG CAAAGAAGCAGTTCTTGAACTCAATGCATCAGATGATAGGTTGGTTCATTTTACCATTCTCTGTCAGTTTTTGTTTTTTC CCCTTTCTAATTGTTAACCTAGCTCAATTTAATAAAAACTTTTTGATTTTATAGAATTTGTTTTATCAATTTAATGTTAA CCTAGCTCAATTTTATATTCCAATTTTTGTTTTTGTTGTAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGC TCAAAAGAAAGTAACGCTGCCTCCGGGCCGACACAAGATAGTTATACTGGATGAAGCTGACAGGTGAGAGTTTTTTTTCA CTTTTTTTCATGGTAATTTCATCCAATTCATGCTGTGTTGTGGTGATTATTGCCTGCTGCTGTTGTTTTCTATGGCATTT TGATTCTGTATCATTTTTACTTTTTGTATTTAGCATGACAACCGGAGCACAGCAAGCCTTGAGAAGAACAATTGAGATAT ATTCCAATACTACTCGTTTCGCTCTTGCTTGTAACACATCGGCTAAGATTATTGAGCCGATTCAGAGTAGATGTGCCATT GTGCGGTTTTCGCGATTATCTGATCATGAGATACTTGGTCGCCTCATGATTGTGGTTAAAGCTGAGAAGGTACCTTGAAA TTCTATTTTGTCTTTCATTCATCTTAGAGCTGAAGCTTGGTATAGTATAAGTCTAATATTATTTCTGTTTGATTGTCTGT CTTGGTTGAAATTGTTTCAGTTAAAATTGCATGGCCCGTTACTGTATGACTTTAGACTGATATTTACAATTACTACCCAC TATTATTATTCTTTCATTGACAACGAAAGGGAGAGCTCTTAATTTGGGCTGAATTTATCTGTAGTTTTATTCCCAGCAAC CTATGAAGCTCAGACATTTCTCCTTCTTGAGATTTCAGAGTGTACTAACACTAGTACGACACACTTATGACATGCGTTGT ACACTCCTTATCAAGTGTTCATTAAAAACTAGTTTTATCAGCCTGGACATTTAACCAGCACCTGAAGGATACCTTAGACA CTTAGACAACTATCAAATAAGGCATGACACTCAAATGACACAATTGTTATCGACAAATTTCATGTTGTTTTCAAACAGCT ATGAAAATGGTTAAAACTTGAAAAAGCGCTCACTGGGTCACATGACACTTTATTTAGGAATGTCACTTCTTCTTATGCTC ACCCTACGGTCTACATAGATATATACTCATACAGGAGGCATATCAAGTGTGCACATGATAAGTGATAATAGTTAATCTTT ACCATACAGTCATGTGTGGGTGCTTAAGATTACCTTAACACACACACACAGATACGTGGTGTCCTTGTGTCCTTTTTTAT ACATCACACGTGTGTCGGTGCGTAAAAATGTCCATGTCATGTCCAGTGTCCGTATCTTTGTTCATGTTCTATAGCTGGCA ACCGAAAAGATAGTATTGCTTCACAGTCTTCATATTAATATCATGTGCCTCTTTCATATTCAGTAATCAGTACTATATTA TCTTCTGATTGTTTGCATTAACTTCCTAACTTTTAACTTTTACTCTTCTTTTTTGGTCTTTCTCTTACATCATCACTTAT ATTCTTCCCTCACTGGGAAATTTTCTCCTTATGTTGTCCGATGTTTATTCTTTATATGAGGAAGAAAGTGATTAAGGAAT TTTGGAGGTTTGCTGATTAGAACTATAGTAATTTTTACTACCCTATGTCAAATAAAAAGAAGGGCATTCAAGGAGTTTTA CTCCTTTCCTGTCCTCTTGCTTTCTTGAAATTGAAAATTATATACTAATTAGCAATATACAGGACCTTAAAAATGGCATT AGTTGGACTCGACCTGTTTCATGTTTTTAGATGATATGCGATATACTGATTTGAAAATTCTTGAACTGAAGGTAACATTT TTACATCTTGATTTTTCCCATTGCCAAAAACTTGGTGGCCTTATGACCTTTGAGGGATTTCAGGATATTTGATATCTTGA AGGAACTCATGAATGATATGGTCCTCATGATTTGGGTGTTGGGCCCTAAGTGGCTAGCTAGCAATAGCTTATCTATATGA AGAGGTTTGCAAATGTCTTTTTAAGTAAAGGCATTAGTTCAAGATGTTTTGTAACATTTGTCAATTGCCATTTTACTCCT TTTAAGCTTAAAACTAGATATTCTAAAATGTGATCACTGGCTAGCCTGGTTATGTTGCTTCTATTTGATACAGTGGAATG GTGATGTTACCAGGTCTGTTATATAGATGTGCAGGTAATATATGGCAAGTTGGCAACTAAATATTGTATGAAGATTATTG CGTTCTGTATAAATTCCTGGGTTTCTCATTTTAGTCTTTAAAAGGGTGACTAATGCACGAGGTTTCCACTGATATGGGTT CCTTTATCATAGAATTTTTTTAAAGGTTCTTGTCAGTGGCAAGGTGAACTAGTTATACCCATAAGTTATTTTAACTGTTT ATAGTTGCAAACTTGCAATCTATTTGGCTAATATTGAGGAAATGCATGATTGAACTGTGTTATTGGTGAAGGTTCCCTAT GTTCCTGAAGGACTTGAGGCCATCATCTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATA CAGCGGGTTCCAGTTTGTCAACCAAGCAAATGTTTTTAAGGTTTGAATCATCTCTGATTTACATTTTGTATTTGTCACAA CCATCGCTTTCGTTAAAATCGTGGTTGGTTTCTAGGTTTGTGATCAGCCGCATCCACTGCATGTGAAGAATATGGTGCGC AATGTGATTGAAGGGAATTTTGATGAGGCTTGTACGGGGCTCAAACAACTGTATGACTTAGGATATTCTCCCACAGATAT CATCACCACACTCTTTCGTATAATAAAGAATTATGATATGGCAGAGTACATGAAACTAGAATTCATGAAGGTAAATGATT ATCTGTTGGCCAAATTTGTATTTATTTTTTAACGAAGTATGTGATAGACATGGTTATTGTCAAATTACAGGAAACTGGAT TTGCTCATATGAGAATATGTGATGGAGTTGGTTCTTATCTTCAGCTGTGTGGCCTATTGGCTAAGCTTTTTCTAGTTCGT GAAACTGCTAAAGCTGCATGAGTTAGTCCAAGTGCAACTAAGATATATATATATATATATATATATATCTGTTCTTCCCT TTTCTGATACTGAGAATGTTCTGCTGTTCTGATAACCAGAAGATATACAGTAATGCTTCAACTTCTCTAAATATGTTATG TTTAGGTAGGCTCATTTTCTGAAATATTTTATCTGTATATTTAGTTGTGAATGTCATTTTCTGATTTTTAACGAATCAAC TTCTCAAATCTCAAGACATTCAGAGCTATTGAGCAGTACAAGGTTGCTTGAATGTGGTTTTTAGTTTTGACAATGGAAGG AAGGGGAAGGCGTAATGTTTTGCGTGTTGTCTTAATATTGTCTATCACCTTCATTTCTATCACCTTCATTTTGTTGAAGA ATATATTAGTATTCGTTGAAGTGCTAGTTACTGATATTATCAAAGGTTACCGGGCAATTTGAGCTTCAGTCTAACTCATA TTAGTGTGAAACGCAAAGAGGTCAATGTGGAAAAACAAAGCTTCCTCTGTTCATGAGTGGTTTCTGACAAGTCCT
CDS sequence (LotjaGi4g1v0221000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCTCATCGTCAACCACCACCAACACCACCGTCGGCTACGACGTCCCATGGGTGGAGAAGTACCGACCCTCCAA GGTCGCCGACATCGTCGGCAACCAAGACGCCGTCTCTCGCCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAACCTCA TTCTCTCCGGTCCTCCCGGCACCGGCAAAACCACCAGCATTCTCGCCCTCGCACATGAGCTTCTCGGTCCCAATTGCAAA GAAGCAGTTCTTGAACTCAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAAAA GAAAGTAACGCTGCCTCCGGGCCGACACAAGATAGTTATACTGGATGAAGCTGACAGCATGACAACCGGAGCACAGCAAG CCTTGAGAAGAACAATTGAGATATATTCCAATACTACTCGTTTCGCTCTTGCTTGTAACACATCGGCTAAGATTATTGAG CCGATTCAGAGTAGATGTGCCATTGTGCGGTTTTCGCGATTATCTGATCATGAGATACTTGGTCGCCTCATGATTGTGGT TAAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAGGCCATCATCTTCACTGCTGATGGTGATATGAGGCAGGCAT TGAATAACTTGCAAGCAACATACAGCGGGTTCCAGTTTGTCAACCAAGCAAATGTTTTTAAGGTTTGTGATCAGCCGCAT CCACTGCATGTGAAGAATATGGTGCGCAATGTGATTGAAGGGAATTTTGATGAGGCTTGTACGGGGCTCAAACAACTGTA TGACTTAGGATATTCTCCCACAGATATCATCACCACACTCTTTCGTATAATAAAGAATTATGATATGGCAGAGTACATGA AACTAGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATATGTGATGGAGTTGGTTCTTATCTTCAGCTGTGTGGC CTATTGGCTAAGCTTTTTCTAGTTCGTGAAACTGCTAAAGCTGCATGA
Protein sequence (LotjaGi4g1v0221000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSTTTNTTVGYDVPWVEKYRPSKVADIVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNCK EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTIEIYSNTTRFALACNTSAKIIE PIQSRCAIVRFSRLSDHEILGRLMIVVKAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPH PLHVKNMVRNVIEGNFDEACTGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYMKLEFMKETGFAHMRICDGVGSYLQLCG LLAKLFLVRETAKAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 174 | 164 | 3.1E-55 | – | |
| PANTHER | 14 | 326 | 313 | 4.0E-176 | – | |
| PANTHER | 14 | 326 | 313 | 4.0E-176 | – | |
| SUPERFAMILY | 15 | 236 | 222 | 1.78E-52 | ||
| CDD | 32 | 169 | 138 | 3.23599E-24 | – | |
| SMART | 49 | 181 | 133 | 1.7E-12 | ||
| Pfam | 53 | 171 | 119 | 1.4E-14 | ||
| CDD | 174 | 236 | 63 | 2.83242E-18 | – | |
| Gene3D | 175 | 238 | 64 | 2.8E-28 | – | |
| SUPERFAMILY | 238 | 329 | 92 | 2.13E-26 | ||
| Gene3D | 239 | 331 | 93 | 3.8E-30 | – | |
| Pfam | 239 | 324 | 86 | 3.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi4g1v0221000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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