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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0111100 |
| Transcript ID | LotjaGi2g1v0111100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor C subunit, putative; TAIR: AT5G27740.1 ATPase family associated with various cellular activities (AAA); Swiss-Prot: sp|Q8VXX4|RFC3_ARATH Replication factor C subunit 3; TrEMBL-Plants: tr|I3SC80|I3SC80_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0111100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:39846096..39851625) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGTGGGTGGACAAGTACCGTCCCAAAACCCTAGATCAGGTTATGGTCCACGACGATGTCGCTCAAAACCTCAAGAA ATTGGTACTCTCCATCTCTCTCTCTACCCTAATCAACTTTGTGTTTGGTTTAATTTTTTTCAATTTTAATCACTTTTTGT TTCGATTATTCGTGTTGGTGACTCTGTTGTGGACAGGTTACGGAACAGGATTGTCCCCATTTGCTATTCTATGGTCCATC TGGTTCTGGCAAGAAAACCCTAATCATGGCGCTTCTCCGCCAAATGTTCGGAACTGCTGCCGAAAAGGTTCTTTTTTTTC ATCTTTGTTTTCAACTTTGTAACTATTGAGTGTGACTGAAAAAGTAAACTGAGTGTGTTTGTTTCAGAGACAAATTTAAT AAAAATGTGTATGAGTAATGTAGTTTACTTTTCGTTTATTCCGACTAGCTGGGATCGGCTACATGTATTAAACCATTCCA TTTTGCTATATATTAAGTTTGACGGGAAATTGTTTAGCTTTAAATTTCTCTTAATAGAATTTAAGATAATATTATATTAA TTCTAGTAAGGTTTATTGTCTAATATTTAATCGTTATTTTAATGTATCTTGGGTTTCTGTTTGGTTTTCTCGTGTTAGAA TTGCGCTTCTTCTCGTCTAATCTTCGTGCCCTATACTTTTGGTTCCTTTCCTAAATGGTCTTTGTTGATGTTGCAGGTGA AGGTGGAAAATAGGACGTGGAAAGTGGATGTAAGCTTCATTCTTTCTCATGCGGTGTTCTTCTTTTTGTTGTTTTGACTT ATCAGGAATACCCTTACGTTCGCATAGTTTAGGGTGTTTTTTTATATGATTTTACTGGTACCTTAAGTAATGACTAGTAA TGAGTGTGGAGTATGTAACTGATTATTTGCCACTAGTTGCCAAGCAAGAGGTACTGGTTACCTGGGGAAAATGAAGGAGG ATGCTGGCGAAACATTTAGAATTGTTTGGTTGGAGGAGAACGGAGGGGAGGGGAGGGGAGGGGAGGGATTTTTAAAATTT GATTTTGTTTGGTTCAAACTTTAGGAGGGGAGGGGAGGGAAATGGAGGGGAGCAAAATCCCTCCAACCTCAATTTTTTGT TCCCCCAAAAGTGGGGGAATTAAGAGGGGAAATAAATTTCGGACAAAAATAACCCTGCACAAATTTAAAAATTCCAATTT TGTATTCTAGGGCTTCCCCTCTACAATTCACATCTTTGGCTAATGACTAGGGAGGTTCCAACTTCCAAGCCACCTGTTGT GGAGGAAGACAAGGAGTTCCTGGAGAAGAAAGAAAGGATTCATGAACTTGAACAGTAATCAATGGTGCATCTCAACGGGT GTTATTTTCTTGGGGTTTAAATGATGTTTTTTTGCTTTTTAGTGAGAATTTCTCTTCAATTGAATAAATGTGATATCCAT AACCAAGATGAAAAGCCTGGTAGTGTTGGTGCCGTTTTTGCAACCTTGTTTCGTGTTATAAACTAGAATGTTTTTGCTTT TGTATGATTGTTCATTGCTTTACATGCGTTTGGGTGGAATACATGAACTCTTGCAGAATTCGTACTTGTGGGGAATGAGG AATGGTTGAGTCATGAGCGTTGAGTGGTTTGGATTCACGAAACTGTTAAGAATCAGAGTAATTGTTTTTTTTTTTTTTTA AAAGAGAATCAGAGTAATTGTTGATGAAGAAGGATGTATGTTATATTGTGTTGTTAGATTCAAGAAAAAATATAAAAGGA TATAAAAGTGATTTTAATTATAAAATCTCTTCCCTCTCATGAACTAAATAAAAATAAGTTTGTTTCCCCCCCCTCCCCTC CTATGAACCAAACGTAATAAGTATAAAAATCCCTCCCCTCTCTTCCCCTCCCCTCCCTTCCCCTCCATTAAATGTTTTGT TGAGACTTGAGATAGAAAGTTCCATCTGAAGTAGCTAATTTTGTCAAATATTTTGCCAGCGGGATATGACTTGGAGAATA TCAAAGGCCAATTCACAACATGCAAACTTTTTTAGTTTTTCCTTTGGTTACAAATATCATGGTCTTAAATCTTGATTCTT GAGAATGTCCATACCATGTTCAATTCCCGTAGGAGCACATTTGTTCAACTTTGTGAATTATCCTCGGTGCTGCTCTTGAG GCACAAGCGTGAATTTTATTGATTTCTCATAGGTTTGTTATGTACAGTAAACTGAAGCAGTATTTTTATTTTATTTTGAA GTTCTTTGAAATTGGTTTCAGGCTGGAAGTAGATCAATTGATTTAGAGCTGACAACATTGTCTAGTGCCCATCACATTGA AATGAGTCCAAGTGATGCAGGCTTTCAGGACAGATATGTTGTTCAAGAAATCATCAAAGAAATGGCTAAGAATAGACCCA TTGATACTAAAGGGAAGAAAGGATTTAAAGGTAACTGGCTATATTTATTTTAACCTTTGTGTTCTTTTAAGCATATAGAA AGCGGAACCTGTGCATGGTCAACAATTAGTTTGGAGTTTTTTTCGTATGTATGTTCTATCTTTTAAATCTTATCTGTGTT TGTAACATTGCATCTTCGATTGTGTAGAATGCTGTTATGTTTGCTAGTGTCTAATTTACTTATCTAATGCATCCTTCTTT TCGTTTTGTAATACCCATGTCAAATAAGTAAGCTCTCCACCTTGGCTTGAAAATCAATGCTAGGATTAGAAGCATTCACA TTTATCTTTTTTGTTATACTTGATTTTTTCAAGCTGGTTTATTTTGTCTGTATCAGTACTAGTGCTTAATGACGTTGACA AGCTCTCTAGAGAAGCTCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTATTGCAGATTAATTCTATGTTGC AATAGTTCTTCAAGAGTCACTGAAGCAATCCGCTCCCGTTGTCTAAATATACGAATAAATGCACCAAGTGAAGAACAGGT CAGTTAATTTTTAACATCTACTGATTTGGCCAAGGAAAGAAAGGAATCTGTTTCCGTTCTTGTTTTAAGTTTCTATTAAG TAAAGGGATTTTTAGCTTTGAAACTGTTGTTTTCTCTGGCAGGGTTGTGAGTAGTAAGTAGTTTCCATTTTTCCCTCAGT ATTATTTTGCTTGCTTGTTATTTCTTGTAGATAAATTGTGGTCTTACCAGGTGTCATGTTGCTGTTGCAGGCATGAATGT AGGATAGGTTCATACTTCATAATTAATTTTTGTTATGCATTATTCCTTTTCATGAGTGATCTCATTGTTATAGAGAGGAT GGTCTTATGATATATGACTGATAGCATAAAATACGATTAGTTACAAAATATATTATGAAGAGAGAAAGTTGGGTCAGCTC ATAATGGAAACTATAAGAGTCTTGTCCTAGGTGGTTTGGAAATATGTGTGGAGAAGATATGTTGAAGGACTGGAGCATCG ATGCGGAGGATACACTAGATGGAGAATAGTCCAATAGCTAGAATATATAACAAACCATTATTAGAAATTTAGGTTTAAAT AGCCTGTTAAGGGACTTGATTCATGACAGAATATGTTCTATTTAGCTGCCTCCACCCAGTGGGTATTATTGTGGTTGTTT TTATTCCTCATCATGACAGGATTAAATACTGATTAAGAAACTTGGAGAGGATGTTTGAGTTTTAGATTATAGAACGCTTT TGCAGATGTAATGAAGGACAGCAATATTACTTTCTTAGCAGAGCTTTGGTGGCAAAATCTCTGCTAAGAATCTTACTTGT ACTTAATCATCAAATAATTCAAAATATATCTTTGACAATCATTATGATTAGGCCTGGTACTTCTTTGAAAACAAAAAAGG CCTGGAGATCATGTAGTTAGCTTGTTTGTCTCGGATGCTATTCTTTCATTTTTTTTTTCTGGCTCCCGTTGCTGTAAAGG GTATGCCAAAGGTATTCATATTTCATAGGATTTCGTATGTTATGATAATATACGACAGATCAACCTCCACAAAAGAATAC CATACCATTAGACAATATTATATATGCTGATATTGTCTGGCATAAGCATTCTCTAAATTTCATATTCATAATTCATCATT ATTGAATTATTGGAAATCTATGTGGCAGATTGTTGAAGTTATAGAGTTCATTGGTAAGAAAGAAGGGCTGCAAATTCCTT CTGGTTTTGCTGCTCGCATAGCAGAAAAATCAAATCGGAATTTAAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTC CAACAGTAAGCCCCAGAATCTAATTCATTAGTGGATGTGAACCTCAGATGGGTGACTACTGACAACTGTTCCTTTTGCAT ATTGTTGCCTGTGTTACTCATAGGTATCCTTTCACGAACAGGCAAACAATTCCCCCAATGGACTGGGAGGAATATATTTC TGAAATAGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTTGCTTTTGATACAGTTTACTATTGTCTGATCTTTC ATAATAGAATTTTTTTTGAATATTGAAATTGGTCAGGTTTATAGATATCCTACCCAATTGTTTAGTCAACTAATCTCATG TTTTAGTTTCTTATTCAGTGATTTAGTGATCTCTGTGGCTTCTGTTCTGTGAAATGCATTTTTCATCTCTCGCTGTCTCA TATCTTAGGTTGTTTCAAGTTCGAGGGAAGCTGTATGAGCTTCTAATTAATTGCATTCCCCCAGAGATGATTTTGAAGGT ATGTGTGTTCCTTTGCAAATGTCCCTATGTAATTTTTTTGCCTGTCCTTCAATGTTAGCTTTGTTGGCTCAGAGGCTTCT TTTTGAGCTATTGAGGAAACTGGATGCAGAACTAAAGCATGAAGTTTGTCACTGGGCTGCATATTATGTAAGTGCATTGT TAATATTATATTGTATATAATATAATTCAGAATACGGCAGCTGGAATTGATATGGTGTTCAGGGCTGCTGTATTTGTTTC TCCTAATTTGTTAATTTCTAAGCCTCGACTGTTCTGTGGTTTGTTATGTACCTTCGGTATAAGCATTCGTAAAATATCCA TGTGTTTTTCCCCACACTTATATATGGCCTCATTAACTTGGAATTTCTGAATTAATAGATGAAGATTTTGTCTAGCCATT TTCTCTTCTTATTTTTCAAGGGTAAGGATTCCCTCTGATTCTTCTTTTCAATCAATACAGGAACATAGGATGCGCCTTGG ACAGAAAGCAATTTTTCACATCGAAGGTATATAAACCTGAATGTGTTTGATAGTTAGATTGACATTTACAGCTTATGGAT TTGAGTGCTGACCATGGCAAGTTCTTATGGAGACCCTGTCTATATTTATGCAATGTGAATATAAGCTGGGCCTATAGAAT ATTTCTTGGCAAACTTCTCGTTATTTATTTATTTTTACCCTAACAGGAGGGTTTAGACATAAATTTATTTCTGACAACCT CTTTTTTTCTTTCGTATGTTTACATTGGCAGCATTTGTGGCTAAGTTCATGAGCGTCTATAAATCCTTTCTCATTGCTAC ATTCGGCTGA
CDS sequence (LotjaGi2g1v0111100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTGGGTGGACAAGTACCGTCCCAAAACCCTAGATCAGGTTATGGTCCACGACGATGTCGCTCAAAACCTCAAGAA ATTGGTTACGGAACAGGATTGTCCCCATTTGCTATTCTATGGTCCATCTGGTTCTGGCAAGAAAACCCTAATCATGGCGC TTCTCCGCCAAATGTTCGGAACTGCTGCCGAAAAGGTGAAGGTGGAAAATAGGACGTGGAAAGTGGATGCTGGAAGTAGA TCAATTGATTTAGAGCTGACAACATTGTCTAGTGCCCATCACATTGAAATGAGTCCAAGTGATGCAGGCTTTCAGGACAG ATATGTTGTTCAAGAAATCATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTAC TAGTGCTTAATGACGTTGACAAGCTCTCTAGAGAAGCTCAACATTCTCTCCGCAGAACAATGGAGAAATACAGTGCTTAT TGCAGATTAATTCTATGTTGCAATAGTTCTTCAAGAGTCACTGAAGCAATCCGCTCCCGTTGTCTAAATATACGAATAAA TGCACCAAGTGAAGAACAGATTGTTGAAGTTATAGAGTTCATTGGTAAGAAAGAAGGGCTGCAAATTCCTTCTGGTTTTG CTGCTCGCATAGCAGAAAAATCAAATCGGAATTTAAGGAGGGCCATATTATCATTTGAGACTTGCCGTGTCCAACAGTAT CCTTTCACGAACAGGCAAACAATTCCCCCAATGGACTGGGAGGAATATATTTCTGAAATAGCATCTGACATAATGAAGGA ACAGAGCCCAAAAAGGTTGTTTCAAGTTCGAGGGAAGCTGTATGAGCTTCTAATTAATTGCATTCCCCCAGAGATGATTT TGAAGGCTTCTTTTTGA
Protein sequence (LotjaGi2g1v0111100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLWVDKYRPKTLDQVMVHDDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGTAAEKVKVENRTWKVDAGSR SIDLELTTLSSAHHIEMSPSDAGFQDRYVVQEIIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAY CRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVIEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY PFTNRQTIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLINCIPPEMILKASF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 189 | 189 | 4.1E-54 | – | |
| PANTHER | 2 | 295 | 294 | 1.1E-132 | – | |
| PANTHER | 2 | 295 | 294 | 1.1E-132 | – | |
| SUPERFAMILY | 2 | 256 | 255 | 1.01E-40 | ||
| CDD | 19 | 190 | 172 | 6.48683E-10 | – | |
| Pfam | 20 | 188 | 169 | 1.1E-11 | – | |
| SMART | 33 | 192 | 160 | 6.1E-7 | ||
| CDD | 189 | 257 | 69 | 5.24686E-9 | – | |
| Gene3D | 190 | 254 | 65 | 3.0E-6 | – | |
| SUPERFAMILY | 251 | 295 | 45 | 5.78E-14 | ||
| Gene3D | 255 | 297 | 43 | 1.4E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi2g1v0111100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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