Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0261200.1

Overview

Field Value
Gene ID LotjaGi1g1v0261200
Transcript ID LotjaGi1g1v0261200.1
Lotus japonicus genome version Gifu v1.2
Description Replication factor C subunit; TAIR: AT1G77470.1 replication factor C subunit 3; Swiss-Prot: sp|Q6YZ54|RFC3_ORYSJ Replication factor C subunit 3; TrEMBL-Plants: tr|A0A0B2QNG7|A0A0B2QNG7_GLYSO Replication factor C subunit 5; Found in the gene: LotjaGi1g1v0261200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:63940846..63947349) extracted from Lotus japonicus Gifu genome v1.2.

GCTAAAGAACAGCGAGCCACTGCATCCAATGCAACTTGCGACTCAAACCGGTCAGGTGACCGATTCCCGGTCCAACCGAC CCGATTTCCACAACACAGCTATAACCCCTAGAATATGTTTTGGCGCCACTGGCCTTCACCATTTTGAGCAGTGAGCGCAA ATTCCAGTTCACTTCTCGGACAACGCACTGAGATAACAAGCCGCTTTGGCATCGTGACCTAACAATGGCGGAGGCGGAGG CGATTCATCCCATGGAAATCGACGGCGACGACGACCTTACTTACTCCGCGAGGCCCGACAAGGGCAAAAGTGTCCTCGTC GCCGGCAACCCTCCCGGCGGCCAAAAGGCGATCCCGTGGGTTGAGAAGTACCGTCCTCAGTCCCTCGACGACGTCGCTGC TCACCGCGACATTGTCGATACTAGTAAGATTCTCTCTTCCCTACCATTTCATCTCCTAGGGTTTATGGTTAATCTTCTTC CGATTGCTCACTGTAACGATTCTTCAGATAGCGTCTGAAAATGTAGTTCAATATCTAAGTTTCTGCAATAACGGGATAAT AATTTACTTTTCTTCTTTTGATTTGACTGTGATTGCATCGTTCTAGGGTTTTAGGGATATGCTGATGGTGAAATTTCAGA GGAGATTTTTATGCCAATGGCATGCATTTTTTTTTAATTTTTTGTGTGTTTCATTTTATTGATATTTGGTTTGGTTAAAA TTAGGAAAATAAAAAGGGATTGTAATTGTGCATCTTGTGATTTTTGGGTATTCATACCTATTTGCTGTTTCACTATCATT GGTGTTTCTTGCTTCTTCTTTGGTTTTGGATTGCTTCTCATTCATTGTTTGTTCATTTGTTGGGCAGTTGATAGGCTGAC TACTGAGAACAGATTGCCCCATCTTCTACTGTATGGCCCTCCTGGTACGGGAAAAACATCAACTATCCTCGCTGTGGCGC GCAAACTGTATGGCGCGCAATACCGCAATATGATTTTGGAGCTGAATGCTTCTGATGATAGAGGAATTGGTGTTGTACGG GAGCAGATTCAAAATTTTGCTAGCACTCAGAGCTTATCATTTGGGTTGTCTTCGCTGCCGATTATTTCTTTCCTTATATC TCTGCAGTTCTTACTTTATAAGTTTGCTGTTTTATGACTGCTATAGATAGGGCGTTCTAGTTTGGATCTTTGGTTTATCG TGTAATTTGAACTTGGCTGTCAATTTGATAATTTCTGTTCGGCAAGGTGTTCTTCTGTAAATCTTGGAATAATTTATAAT AAGCATTGCAGATTTTGATGCAACTTTTAAATATTATTTCCTTGCTGGATGCTGGAAAAAGTTGGGCGCTTATTGTGTAA ACAGTTTCTTCCCCTAGTAGAGATATCAACACATAGATTAAGACATTGAAGGCCATAAGAGGACACTTGTGTAATTCCTT TTGTTCATTTCAGTTTTCACTTTTCAGTCATGATGGTTCTGATCTTTAGGCATGGTTATTTGTTTTTGTCATTTTATTTT TCTTGAATGCACATTTGATTTGGAAGTTATATGGATAAAAGTGTAACTAAAATTTAAACATTTCCTTTGAGAAGTTTTTT GTTGTTCTGGAAGTGTACTGGAACTGCATGTTTTGTCCTTAACTGACTATCAAATTTTCTCTTGATAGTGTTAAGACCTC TGTAAAACTGGTCTTGTTAGATGAAGCGGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGGTATGCACTAAT TTCTATACACTATCTAACTAGTTTATATAGCTTCAAACAGTTTCTTGAGTTATAATATCTTCATCTTCATTTGGTACAGT GATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATATGTAATCATGTAAACAAGATTATTCCAGCACTGCAATCAA GATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCTGCCCATGTCAGTGAAAGATTGAAACATGTTATTAAGGCTGAAGGG TATGTTTCTTTGTCTGTTATCTATCTTGCATGTGTGTGTTTGAGTCAAAAATGTTTTTTGCTACATTACTTGTTTCTGAG ACTTTCTGTTGTATTCTCATCTCAGTTGGGGATTTGTTCATATTGAGTGCCAATGTAGTGATAATGGGGCAGATAGAGCT TTTATTGCTTAATTCAAGATTTGTAGTTTATTCTGTTAATGTTTTAAGTTTTAACACAATACTTTATCTACTGGAAGATT GAACTTTTCTGGCAGTAGACTTTTTTCATAGTGATGTATGTACATATTTACTGTGCAAAGTAAAACTCGGTTTCTTTTGG GTCTCATTTCGTTCAGATGGATTATGGAAAGGGCTGGAAAGGGGTAATGCCTATGATTTCTATCTCCTTACTCCATCATT TTAGCATATTTATCCATTTGCAGTTAGGCTTCAGCCATCGTAGAAGCAGGATAAACTGTTCTTGTATAATTGTATTATCT ACCCTGTTTGAAAGAGCTTTTAACTAAGTTGTGACTTTTCTTTTCTTTTCGTTTTCAGTTTTTTGTTTAAATGATCTGAA TATTCAAACCAGAAAAGCATTATAATGCCAAGTGCAAACCACATGAGCAATTTATCTTGAACTTTAATTTTATATTAAAA AAGAAACTTAAATTTTGGTTTTTAGTGTCGAGAAAAATTTAGTACATTAAATAGGTTGATTCTTTTATTCATTTGTATAT GTAAACAGAAATACTCCACGAAAAGGGATATTACATGCTCTTTTTATACTGATAATTGAATCATAGGGAGAGAAACCCTT ACATTTGAACTGCAGGTGCAGTCAGAGTGGTACAGAGTTGTAAATGAAGTTGTAACATTAGTTCCATATTATAAGTACCA CATATATAAAATTGGTTGTACATGAAGTTGTAACATCAGTTCCATATTGGACTTGATACCTTGCAATATGATGATTAACA TTTTGTAATTTGATTAGGCTTGATGTTCAAGACAGTGGCTTAGAAGCCCTTGTACGGCTTAGCAATGGTGATATGAGAAA GGCTTTGAATATTCTTCAGGTACTTGTTGATAGCCTTAGTTTCCTTATGGCTTATATACAAATATAGCATAGCTTGTGCT TTTATGTTATGTCTTTTTTTTTTTCAGATAAAGAAGTAATTGTAGCAGTTGCTACAAAAATGAACTCTATTTTGGCCATG AGTACTACACTGTTTTATTACTGTCCCCCAGCCATTTATGTTGACAAGCATATGGAATGTGTAGAACATACAGCTTTATA TATGAATGCTCACTTAGGATCATATGACAATTAAAACTGTGGGGAGGGTCATACATGATGAAGTCTTGACACAAGAAGTA CCAATTTCATTATCTTCACTCAAAGATGACCGTACATGATTTGAGACTAATTCTCAAATAACATCTGTACTGTAAATTCT TGAAAACTTTTGACTTAAAAAATTGGTAATGTATACTATTATTAAATAATATATCCTAGATACTGTTAGGACCAATTGCA AGGTATAAGACTTGAGTTTCACATAGGATGAACGGAATTATAGTGTGGGGTTTATAAGGTCTCATACTCTCCAACTACAA TTGCTAGCTTTTATGATGTGGTTCTCCTGAGGTTCTTATCAATTGGTATCAGAATTTTCCACCATGTCTCTTAACTGTGA ACAAGTGGCGTTGGTGGGTGACATCGGCATTGCTATGTTTGCCCGAGACTATAGTCATAGGGCAGTGCACAGCCAGCCTG CATGGTGTGAGGCTGTGGTGGTTCTTAGGATCCAATTGCTAGGTATAGGACTTGAGTCCCACATCAAAAGTATGCAATTC TCGTGTGACTTTTATAAGGATTTGGGCTCTCCAGCTACGACGGCTAGCTTTTGTGGTGTGGTTTTCCCATGATTCTTCTC AGATATGTGGTATACTGATTCATTTTGCTGGCAATTTAATTAGGAATTTATATATGATTCACATACTCACATGTATTGAT TGTTTTGTTTGTATCTTTAGTTTGTTTGGAGAAGTATGGCTTATGCTGCAAATCATGACCTTTTTCCATCATTAATAGCT GATGGTGCAGATATAGAATGCAGTATATTTGTATGTGATATTTAGGAATACTTTTAAGAAAGAAAGGTATAGTCTTGCCG TATTTTGAACTTATTTTGTATGAAGAAAAGGAAGATAAAGTAGGATATAAGAGGGATGAGATGCTATATAGTAAACATCT TTCTTAAGTAATTTTTCCATTTATTATTCTCAATTATTTTTCTTGTATCCCAATGCTTGTTAGTATTTAAAGTTTGATTC TTGGCTCCTCTGGTTTTGTTTTACTCTAATCGTGTATCCAATTGTCCTGGATAACTACCAGTTTACAATTCTTAACCATG GAAAAAGTGTTTGATTCACATTATATCCTGAATTATTTTGTTTATTTGGTATGAATTGAATCAATGGATTCTAGATGACA TATTTTGTTGCTTTAATTTTTGTGCAGTCAACACATATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCAC TGGAAATCCATTGCCTAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGTA TGAAGTTATTCCTTTACATTGGTGTTTAATATTTATAAGCAATTTATGATATTTATTTGGCATTAATTTCAAATAGGAAT ATATGAAATCAAGACGAGGAAAGGATTGGCCGTGATAGATATTGTGAGAGAAGTGACAATGTGAGTCTTCTGCATTATAC TGACTGCCTAACTTTCTGATAATTTATTTTACAGATCTTATTTTTACTCTATTGTTTCCATAGGTTTGTTTTTAAGATTA AGATGCCTCCATCTGTTCGAGTGCAGCTGATGACTGATTTAGCAGACATAGAGTATGTATTGCTGCCCTACTTTTTTACA TGTTCTTCTCCTTCTGCCTGACCTGACTATATATAACTATTTAAAAGTTGTTTAAATATGCCTTCAAGTTAAGTCATGCC CTTATCCTTTTACAAAGACTAGGCCAAGTCTTAAAATGGAAAAATATTATATAGTAGGTAATAAGTTACAAGTCAGCGTA AGGCTTGCATTTTGCAAAAATTCTTGAGCTTGTTTAGGTTTAGTCTAAATGGCCTAGCCTATTTCAAGCTGTAATAATGG ATGTGGTTGTGAACAAGCACAATAATGGAAGAAGAATATAATAATTTGGCAGATATTATCTTGATAGAAGATCAAGATAG AGTACTTTTCTCTATCTTTGCACCCTCATATTTTTGGCAATTGTAGATACAAGATTATTTAGTGGTATAGTACCCTGTTG ACCCTGTATAAGTAGCTGTGCCCTGTTGGACTGCATGCATTATGATACTATGCCACTTGCTACATTCATATACATTGTTA TACAACTAAGGTTTTACTTTGCACTTGTTGTAATTAATCCAAAATGACCATTCATGTATCTACTTGTGATAATGGGAATG AAATTTCCTCTCTTCCAGGTATAGATTAAGTTTTGGGTGCAACGATAAACTTCAGCTTGGATCAGTTATTTCTTCTTTTA CACGTGCTAGATTTGCACTCGTTGAAGCTGCTAACCTTCTGAATCCGGTCCATTAGTTGTTATTGCTTCGCATACTAGGT CTCTTGGCTTGTTTGAGTTCCCTGGCAACTGTCACCACTATTTAGAACTAGATTGGTGGATCTCTATTTGTGTAAAGAAA TTGTGGTTGTCTTTTAAAACTTATGACCAATGTTCACAAAATTTTCAGTAGGACATCTTTAGTCTTAAACTTCACTGCAT GCATGCTTGCTTAAGATAGCTATTTAAGATGGCATTATTACATTTAACTGTTATGAATGACATGACACAATAGAAGGCCT TAATATAGATTATGGCCCCGTTTGGATAAACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGTCATAAGCGCTTA TTCATAAGCTATTTTTAAAAATTTATTGAAATAAATTAAAAATAAGCTGTATATAAGCATAAGCTGTTTTTCATAAGCTG TCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGCTTATGACAGGTCATAAGCTGTTTGCATAAGCTCTCCCAAACACTG GCGTAAGAGCTTATGTTGTCAGATAAGCTCAAATAAGCTCTTCCAAACTGGGCCTATAGCTGTGGCTTTGATAATGCAAG CTTGAAAATTGAAATGAATAGGGTTGGGGGTGGGGCAAGCTGGTGAAAAAAGTACATGTTCCTAAGACGAGTAGAAAATA GCTTATCCTAGGAATGGACAAATCTACCTGTGCTATGATTGATTAGTTATTTTCTCTTTCCCTTTTACAAATTGAATATA AAATAGAAAAAACGATTGTTCAGAAGAGAGACGTATTAAGCCAAACTGCCAAATCATGGTTTTATCAATTGCAACATGAT TATCTATCTCCCTCCTCTCCCAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0261200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAGGCGGAGGCGATTCATCCCATGGAAATCGACGGCGACGACGACCTTACTTACTCCGCGAGGCCCGACAAGGG CAAAAGTGTCCTCGTCGCCGGCAACCCTCCCGGCGGCCAAAAGGCGATCCCGTGGGTTGAGAAGTACCGTCCTCAGTCCC TCGACGACGTCGCTGCTCACCGCGACATTGTCGATACTATTGATAGGCTGACTACTGAGAACAGATTGCCCCATCTTCTA CTGTATGGCCCTCCTGGTACGGGAAAAACATCAACTATCCTCGCTGTGGCGCGCAAACTGTATGGCGCGCAATACCGCAA TATGATTTTGGAGCTGAATGCTTCTGATGATAGAGGAATTGGTGTTGTACGGGAGCAGATTCAAAATTTTGCTAGCACTC AGAGCTTATCATTTGGTGTTAAGACCTCTGTAAAACTGGTCTTGTTAGATGAAGCGGATGCCATGACAAAGGATGCCCAA TTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATATGTAATCATGTAAACAAGATTAT TCCAGCACTGCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGCTGCCCATGTCAGTGAAAGATTGAAACATG TTATTAAGGCTGAAGGGCTTGATGTTCAAGACAGTGGCTTAGAAGCCCTTGTACGGCTTAGCAATGGTGATATGAGAAAG GCTTTGAATATTCTTCAGTCAACACATATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAATCC ATTGCCTAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTAAAAGAATATATGAAA TCAAGACGAGGAAAGGATTGGCCGTGATAGATATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCA TCTGTTCGAGTGCAGCTGATGACTGATTTAGCAGACATAGAGTATAGATTAAGTTTTGGGTGCAACGATAAACTTCAGCT TGGATCAGTTATTTCTTCTTTTACACGTGCTAGATTTGCACTCGTTGAAGCTGCTAACCTTCTGAATCCGGTCCATTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0261200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEAEAIHPMEIDGDDDLTYSARPDKGKSVLVAGNPPGGQKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLL LYGPPGTGKTSTILAVARKLYGAQYRNMILELNASDDRGIGVVREQIQNFASTQSLSFGVKTSVKLVLLDEADAMTKDAQ FALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHVSERLKHVIKAEGLDVQDSGLEALVRLSNGDMRK ALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTRKGLAVIDIVREVTMFVFKIKMPP SVRVQLMTDLADIEYRLSFGCNDKLQLGSVISSFTRARFALVEAANLLNPVH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
38 202 165 6.5E-52 –
PANTHER
PTHR11669:SF9
41 360 320 7.8E-161 –
PANTHER
PTHR11669
41 360 320 7.8E-161 –
SUPERFAMILY
SSF52540
43 260 218 1.85E-49
IPR027417
CDD
cd00009
63 201 139 1.28524E-21 –
SMART
SM00382
75 205 131 5.7E-11
IPR003593
Pfam
PF00004
79 200 122 9.8E-17
IPR003959
CDD
cd18140
202 264 63 1.62452E-20 –
Gene3D
G3DSA:1.10.8.60
204 266 63 4.7E-24 –
SUPERFAMILY
SSF48019
267 356 90 1.4E-21
IPR008921
Pfam
PF08542
267 352 86 8.3E-17
IPR013748
Gene3D
G3DSA:1.20.272.10
267 365 99 2.3E-30 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0261200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…