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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0416900 |
| Transcript ID | LotjaGi4g1v0416900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calreticulin/calnexin; TAIR: AT5G61790.1 calnexin 1; Swiss-Prot: sp|Q39817|CALX_SOYBN Calnexin homolog; TrEMBL-Plants: tr|A0A151S2C8|A0A151S2C8_CAJCA Calnexin isogeny; Found in the gene: LotjaGi4g1v0416900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79259732..79263303) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGAAAAAAAAGACAACGTGGCAAGAGACTATTGGTTAGCGTCACGTGGAAGATAAAACCAATTGGTTGAAACAGCAC GCAGAAAGTGTGACGAAGATCCATCTATAATAAGCGAAGCAAGTACTTTCTGGAACACTTTCGAGTTAGGGTTCAGAGAG TGAGTGTGCGTGTACGATCTACGATGGGAGAACCAAAGCGAACCCCTCTGTTGATCTTCGCGGTGCTCCTCGTGATTTCC ACCTCTTCGTTGCAGTTTCTCTCCGCTTCCGATGATGCGGTATTTCACCTTCCCCTTCTCCTTTTCCGATTCGTTTCAAT TTCTGTGTGTGTGTGTAGGATGATTTGATTTTGGATCTCTGTTTTTGTGACGATGTAATTGACGAATCGTGTTGTATGTG GATTGTGGTTTCAGATCTTCTACGAATCGTTCGATGAGGATTTCGAAGGACGTTGGATTGTCTCTCAGAAGGATGAATAC AACGGTAACTGCTATAACTCGTTTCCTTCTTTGGTTGTAGCTTGTGTGTAATTGCCGATTGTTTTCTTCTTCTGTTGCTT ACTTTCATTATTGTTAGATTTTGAATCGAATTTTATTATGTAGTTCAAGCCACTCACGTAGTGGCAACTGATTTGAATCA AACTATAACTTCTGAAATGAAATTTACTTTTGAAATGAACGGATCATTAGAGAGATTGTGTTAGAATATGTTTAGGATTA CCGGTGTACGCAATTGTTGCGGATTACTCGTCAGTCGTCACTGATCAGACTGTTTCCCCAATTTCTTTGTGTATATGTTT TGTTTGTGTTATTAAATCCTGTTGCAAATGTTATGCCAATGTTATGCCAGTCTTTCCCTGAGTTTTTGTGATGATTATCA AAATAAGAGTCAATTGCGTACAGTATGTTGCGGCTGTGCAACCGTATAATATAGCAATGGTGAATCATATAGATTTGCAT GTTATCAGTATTTATATGAGACGAAACGTTGGAATATACGTTTCATGTATTTATTTCGTTAGGTTTGCGTGGATTATATA TTTCATAAACTTGACCTTGAATTTATGTTTTGGATTATTTCCCCTTTCATGCTTCAGTTCATTAATTCCCTGGATGAAGT TTTTCCAAATCCCACTCCGCTTATAGTGGCTTATAGATAATATGTTCTCGCAAGAATTGATATATTTGATTTGTCTTTTG GGTGCTAGGTGCCTGGAAGCATGATAAGAGTGAGGGGCATGATGACTATGGACTTCTGGTCAGTGAGAAAGCAAGGAAGT ATGCTATAGTTAAAGAACTTGATGAGCCTGTGAAGCTTAAAGATGAATCAGTTGTTCTTCAGTTTGAGACTCGCCTTCAG AATGGCCTTGAATGTGGTGGTGCATATCTGAAATATCTTCGACCACAGGAGGCTGGATGGAAATCCAAGGAATTTGACAA CGAATCTCCATATTCTATCATGTTTGGTCCTGACAAGTGTGGGGCCACAAACAAGGTGCACTTCATTTTCAAGCATAAGA ATCCCAAGAGCGGGGAGTATGTTGAACACCATCTCAAGTTTCCCCCATCTGTCCCGTCTGACAAACTATCTCATGTGTAC ACTGCCGTTTTGAAGCCAGACAATGAGTTGGAAATTCTAATTGATGGGGAACAAAAGAAGAAGGCAAATTTCTTATCTTC TGAGGATTTTGAGCCTTCTCTTATCCCTGCCAAGACAATTCCAGATCCTGATGATAAGAAACCTGAAGACTGGGATGAGA GAGAGAAAATTCCAGACCCAGATGCAGTAAAACCAGAGGACTGGGATGAGGATGCACCCATGGAAATTCTTGATGAAGAA GCCGAGAAACCTGAAGGATGGTTAGATGATGAGCCTGAGGAGATAGATGACCCAGATGCAACCAAACCAGAAGATTGGGA CGAGGAGGAGGATGGTGAATGGGAAGCCCCGAAGATTGATAACCCAAAGTGTGAAGCAGCCCCTGGTTGTGGTGAGTGGA AGAGGCCAATGAAGAGGAATCCAGCTTATAAGGGAAAGTGGCATGCCCCACTAATTGATAATCCAGCATATAAGGGTATA TGGAAGCCCCAGGATATTCCAAACCCTGACTACTTTGAACTTAAGAAACCCGACTTTGAGCCTATTGCTGCTATTGGTAT TGAAATTTGGACAATGCAAGACGGTATATTGTTTGACAACATTTTGATTGCTCAAGATGATAAGATTGCAGCGTCCTATC GGGAGACTACATGGAAGCCCAAGTTTACCATTGAGAAAGAGAAACAGAAGGAAGAAGATGTGGAGACTGGATCAAGTGGT CTTGCTAGCTTCCAGGTAATATCATTTTGCTGTTTCCTCTTTCTTTCTTTTATTGCCCTGCACTCCTTCTTTTAGCTACT CTACCACTTTCTTCTAGTTTTTACTTTCTCTAGCATTTCCTCTTCCACTTTCTTATGCTTGATTTTATTTTTTGAACTTG CAGAAGAAGGTATTTGACCTGCTATACAAGATCGCGGACATTCCCTTCCTGAGTGCCTACAAGCTTAAAATATATGTAAG TAAAAAGTGGCCCTTCTATTGGAACCTTGCATCCTTGCATGGTTTCACTTGTTGGAATATGAATTGAATATTGTACTTCT TTACAGGATATCATTGAAAAGGGTGAAAAGCAACCGAATCTCACTATTGGAATTCTTGTATCCGTGGTGGTTGTCTTCTT GTCAATTTTCTTCAGGATCCTATTTGGTGGGAAGAAGCCGGTGAGTATACACTCTGTTTTCTCGTCAGCTAAAGCTCACT CTTGTCTTGTTATATATGTGCTTAAGATTATATATTCATCTATGGACCTTGTCTCTTGTGCAGGCAACAAGGGTGGAGAA GACAAACACAGAAACATCCACTAACCAAGGCGGTGAACAGAGTGAAGAAAACAAAGAGGAGGAAACCGCTGCTCCCCCTG CCCGAAGGAGGGTAAGGCGAGATGATTGAAATGATTGAGAAACTTGACAGGGGCGGCCATTCAAGATCACCATAGATAAA TTTTGAGCTTAGTTGGACATTAGGTTGATTCCATAGCACTTTGTTTTTCATTTTGGTATTTTGAAAGATGATATGCGTAT GGAATGTAAATCAGATATTCTGTATTGTGCTGGTCACTTTGTAGACTTGAGTATTTTAAGATAATTAAGGTTGTACAATT ATTTTTCTAGTATGTAGTACAGATACCAAAATTAGAACCCCGATTTAAATATATGCGTGGTCCAACATTATGAATAGCTG GCCATCCTGGGTATGGATTTAGAAGTATATTCTTCAAGCATAATTTCTTGTTTTGTGGAAGAGTAATTCCATGGTTGCTG ATTAGCAATTGCTAAAAGAAAAATGACGGTGTCTGTGGAAGAGGATGTGGTGGTCGTGAGCTTATGTATAAGCGAGCGTT TCTTCTGATACCATATTAAGATTTAAGAGTAACAATATGATGATAATGTGTAGAATGTAATTTTCATCTCATTGAATTGA AGAAAAACTGAAGTATATATACATGGTTGCACAACCATAACAAAGTTAATCA
CDS sequence (LotjaGi4g1v0416900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAACCAAAGCGAACCCCTCTGTTGATCTTCGCGGTGCTCCTCGTGATTTCCACCTCTTCGTTGCAGTTTCTCTC CGCTTCCGATGATGCGATCTTCTACGAATCGTTCGATGAGGATTTCGAAGGACGTTGGATTGTCTCTCAGAAGGATGAAT ACAACGGTGCCTGGAAGCATGATAAGAGTGAGGGGCATGATGACTATGGACTTCTGGTCAGTGAGAAAGCAAGGAAGTAT GCTATAGTTAAAGAACTTGATGAGCCTGTGAAGCTTAAAGATGAATCAGTTGTTCTTCAGTTTGAGACTCGCCTTCAGAA TGGCCTTGAATGTGGTGGTGCATATCTGAAATATCTTCGACCACAGGAGGCTGGATGGAAATCCAAGGAATTTGACAACG AATCTCCATATTCTATCATGTTTGGTCCTGACAAGTGTGGGGCCACAAACAAGGTGCACTTCATTTTCAAGCATAAGAAT CCCAAGAGCGGGGAGTATGTTGAACACCATCTCAAGTTTCCCCCATCTGTCCCGTCTGACAAACTATCTCATGTGTACAC TGCCGTTTTGAAGCCAGACAATGAGTTGGAAATTCTAATTGATGGGGAACAAAAGAAGAAGGCAAATTTCTTATCTTCTG AGGATTTTGAGCCTTCTCTTATCCCTGCCAAGACAATTCCAGATCCTGATGATAAGAAACCTGAAGACTGGGATGAGAGA GAGAAAATTCCAGACCCAGATGCAGTAAAACCAGAGGACTGGGATGAGGATGCACCCATGGAAATTCTTGATGAAGAAGC CGAGAAACCTGAAGGATGGTTAGATGATGAGCCTGAGGAGATAGATGACCCAGATGCAACCAAACCAGAAGATTGGGACG AGGAGGAGGATGGTGAATGGGAAGCCCCGAAGATTGATAACCCAAAGTGTGAAGCAGCCCCTGGTTGTGGTGAGTGGAAG AGGCCAATGAAGAGGAATCCAGCTTATAAGGGAAAGTGGCATGCCCCACTAATTGATAATCCAGCATATAAGGGTATATG GAAGCCCCAGGATATTCCAAACCCTGACTACTTTGAACTTAAGAAACCCGACTTTGAGCCTATTGCTGCTATTGGTATTG AAATTTGGACAATGCAAGACGGTATATTGTTTGACAACATTTTGATTGCTCAAGATGATAAGATTGCAGCGTCCTATCGG GAGACTACATGGAAGCCCAAGTTTACCATTGAGAAAGAGAAACAGAAGGAAGAAGATGTGGAGACTGGATCAAGTGGTCT TGCTAGCTTCCAGAAGAAGGTATTTGACCTGCTATACAAGATCGCGGACATTCCCTTCCTGAGTGCCTACAAGCTTAAAA TATATGATATCATTGAAAAGGGTGAAAAGCAACCGAATCTCACTATTGGAATTCTTGTATCCGTGGTGGTTGTCTTCTTG TCAATTTTCTTCAGGATCCTATTTGGTGGGAAGAAGCCGGCAACAAGGGTGGAGAAGACAAACACAGAAACATCCACTAA CCAAGGCGGTGAACAGAGTGAAGAAAACAAAGAGGAGGAAACCGCTGCTCCCCCTGCCCGAAGGAGGGTAAGGCGAGATG ATTGA
Protein sequence (LotjaGi4g1v0416900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEPKRTPLLIFAVLLVISTSSLQFLSASDDAIFYESFDEDFEGRWIVSQKDEYNGAWKHDKSEGHDDYGLLVSEKARKY AIVKELDEPVKLKDESVVLQFETRLQNGLECGGAYLKYLRPQEAGWKSKEFDNESPYSIMFGPDKCGATNKVHFIFKHKN PKSGEYVEHHLKFPPSVPSDKLSHVYTAVLKPDNELEILIDGEQKKKANFLSSEDFEPSLIPAKTIPDPDDKKPEDWDER EKIPDPDAVKPEDWDEDAPMEILDEEAEKPEGWLDDEPEEIDDPDATKPEDWDEEEDGEWEAPKIDNPKCEAAPGCGEWK RPMKRNPAYKGKWHAPLIDNPAYKGIWKPQDIPNPDYFELKKPDFEPIAAIGIEIWTMQDGILFDNILIAQDDKIAASYR ETTWKPKFTIEKEKQKEEDVETGSSGLASFQKKVFDLLYKIADIPFLSAYKLKIYDIIEKGEKQPNLTIGILVSVVVVFL SIFFRILFGGKKPATRVEKTNTETSTNQGGEQSEENKEEETAAPPARRRVRRDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 534 | 534 | 2.5E-302 | ||
| PANTHER | 1 | 534 | 534 | 2.5E-302 | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| SUPERFAMILY | 28 | 218 | 191 | 1.9E-48 | ||
| Phobius | 29 | 466 | 438 | - | – | |
| Pfam | 34 | 389 | 356 | 8.9E-147 | ||
| Gene3D | 38 | 398 | 361 | 1.5E-153 | – | |
| ProSitePatterns | 104 | 119 | 16 | - | ||
| PRINTS | 106 | 124 | 19 | 1.0E-49 | ||
| PRINTS | 135 | 151 | 17 | 1.0E-49 | ||
| ProSitePatterns | 139 | 147 | 9 | - | ||
| MobiDBLite | 211 | 318 | 108 | - | – | |
| Gene3D | 219 | 363 | 145 | 1.5E-153 | ||
| SUPERFAMILY | 220 | 359 | 140 | 6.54E-57 | ||
| MobiDBLite | 226 | 256 | 31 | - | – | |
| PRINTS | 233 | 246 | 14 | 1.0E-49 | ||
| MobiDBLite | 257 | 301 | 45 | - | – | |
| ProSitePatterns | 281 | 293 | 13 | - | ||
| PRINTS | 281 | 303 | 23 | 1.0E-49 | ||
| PRINTS | 338 | 357 | 20 | 1.0E-49 | ||
| PRINTS | 370 | 390 | 21 | 1.0E-49 | ||
| Phobius | 467 | 488 | 22 | - | – | |
| TMHMM | 467 | 489 | 23 | - | – | |
| Phobius | 489 | 534 | 46 | - | – | |
| MobiDBLite | 495 | 534 | 40 | - | – | |
| MobiDBLite | 512 | 534 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi4g1v0416900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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