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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1514670 |
| Transcript ID | Lj5g3v1514670.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Calreticulin [Medicago truncatula] gi|357441869|ref|XP_003591212.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| PIRSF | 1 | 416 | 416 | 1.90E-183 | ||
| SignalP | 1 | 17 | 17 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| PANTHER | 4 | 414 | 411 | 1.40E-246 | – | |
| PANTHER | 4 | 414 | 411 | 1.40E-246 | ||
| Phobius | 7 | 14 | 8 | – | – | |
| SUPERFAMILY | 14 | 225 | 212 | 2.85E-72 | ||
| Gene3D | 14 | 239 | 226 | 8.20E-99 | ||
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 418 | 399 | – | – | |
| Pfam | 24 | 259 | 236 | 5.80E-57 | ||
| ProSitePatterns | 98 | 113 | 16 | – | ||
| PRINTS | 100 | 118 | 19 | 1.10E-51 | ||
| PRINTS | 126 | 142 | 17 | 1.10E-51 | ||
| ProSitePatterns | 130 | 138 | 9 | – | ||
| SUPERFAMILY | 202 | 316 | 115 | 6.02E-40 | ||
| MobiDBLite | 211 | 302 | 92 | – | – | |
| PRINTS | 215 | 228 | 14 | 1.10E-51 | ||
| PRINTS | 243 | 265 | 23 | 1.10E-51 | ||
| Pfam | 260 | 333 | 74 | 4.60E-22 | ||
| Gene3D | 279 | 301 | 23 | 2.40E-04 | ||
| PRINTS | 281 | 300 | 20 | 1.10E-51 | ||
| PRINTS | 314 | 334 | 21 | 1.10E-51 | ||
| MobiDBLite | 344 | 418 | 75 | – | – | |
| Coils | 350 | 372 | 23 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of Lj5g3v1514670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1514670.1, powered by CORGI.
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