Domain Predictions — View

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IPR009462

Source: InterPro

Description

IPR009462 is a CHD subfamily II, SANT-like domain.

<p>CHD proteins (name derived from the presence of a Chromodomain, SWI2/SNF2 ATPase/Helicase and a motif with sequence similarity to a DNA-binding domain) are ATP-dependent chromatin remodelers found in plant and animals. In eukaryotes, there are three subfamilies, I, II and III. This domain is found in members of subfamily II which play a role in repression of genes involved in developmental regulation, including Mi-2 from Drosophila melanogaster, CHD3/4/5 from animals and PICKLE (a CHD3/4-related protein) from Arabidopsis. Sequence analysis revealed that this domain has a considerable similarity to SANT domains suggesting that it fold into this type of domain and it is integral to the DNA binding domain of CHD remodelers in subfamily II [[cite:PUB00098174]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v1820910.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like isoform X2 [Cicer arietinum] gi\|502132460\|ref\|XP_004501371.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF06461 PF06465 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd00024 cd00046 cd00079 mobidb-lite	37
Lj1g3v1820910.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] gi\|356515042\|ref\|XP_003526210.1\|	Domains Coil G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR012957 IPR013083 IPR014001 IPR016197 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF06461 PF06465 PF08074 PS50013 PS51192 PS51194 PTHR10799 PTHR10799:SF741 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd00024 cd00046 cd00079 mobidb-lite	39
LotjaGi1g1v0378800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.2 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr\|A0A151TT78\|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06461 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF25 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46
LotjaGi1g1v0378800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.1 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr\|A0A151TT78\|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06461 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF25 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46
LotjaGi1g1v0378800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling factor CHD3 (Pickle); TAIR: AT2G25170.2 chromatin remodeling factor CHD3 (PICKLE); Swiss-Prot: sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE; TrEMBL-Plants: tr\|A0A151TT78\|A0A151TT78_CAJCA CHD3-type chromatin-remodeling factor PICKLE; Found in the gene: LotjaGi1g1v0378800	Domains Coil G3DSA:1.10.10.60 G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009462 IPR009463 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06461 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF25 SM00249 SM00298 SM00487 SM00490 SM01146 SM01147 SSF52540 SSF54160 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00