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PF04567

Source: Pfam

Description

RNA polymerase Rpb2, domain 5

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Associated Lotus transcripts 6

Transcript Name Description Predicted domains Domain count
Lj0g3v0167619.1
– PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine max] gi|356520824|ref|XP_003529060.1|
Domains
11
Lj6g3v2041910.1
– PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine max] gi|356530409|ref|XP_003533774.1|
Domains
19
LotjaGi1g1v0377700.1
– DNA-directed RNA polymerase subunit beta; TAIR: AT3G23780.1 nuclear RNA polymerase D2A; Swiss-Prot: sp|Q9LK40|NRPD2_ARATH DNA-directed RNA polymerases IV and V subunit 2; TrEMBL-Plants: tr|A0A0B2RBE2|A0A0B2RBE2_GLYSO DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi1g1v0377700
Domains
29
LotjaGi3g1v0300900_LC.2
– DNA-directed RNA polymerase subunit beta; TAIR: AT5G45140.1 nuclear RNA polymerase C2; Swiss-Prot: sp|F4KD38|NRPC2_ARATH DNA-directed RNA polymerase III subunit 2; TrEMBL-Plants: tr|K7L1D3|K7L1D3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi3g1v0300900_LC
Domains
26
LotjaGi5g1v0334100.1
– DNA-directed RNA polymerase subunit beta; TAIR: AT5G45140.1 nuclear RNA polymerase C2; Swiss-Prot: sp|F4KD38|NRPC2_ARATH DNA-directed RNA polymerase III subunit 2; TrEMBL-Plants: tr|K7L1D3|K7L1D3_SOYBN DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi5g1v0334100
Domains
30
LotjaGi6g1v0332200.1
– DNA-directed RNA polymerase subunit beta; TAIR: AT4G21710.1 DNA-directed RNA polymerase family protein; Swiss-Prot: sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2; TrEMBL-Plants: tr|V7BQ99|V7BQ99_PHAVU DNA-directed RNA polymerase subunit beta; Found in the gene: LotjaGi6g1v0332200
Domains
31

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 16.67