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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0071400 |
| Transcript ID | LotjaGi4g1v0071400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U1 small nuclear ribonucleoprotein C; TAIR: AT1G49590.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q7XA66|ZOP1_ARATH Zinc finger protein ZOP1; TrEMBL-Plants: tr|I3S6A8|I3S6A8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0071400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9058627..9063816) extracted from Lotus japonicus Gifu genome v1.2.
GTCATATGAAGCTAAGACTAGTTTGACACAATCGACTGGGCCTTAAAGCCCAAGCTTCGTTCTTCACTTCTCATAGCACT TTCCCTCGAAAAACAAAAAACAAAAAAACTCAGAAGTCACCATCTTCGACCTTGCTTTGATTCTGAACTTTGCTCAGCGC TTGTGAGGGTTTTGAAATTTGAAGAATCTTGGGTTTGCTCTTGACTTTGCTCAACTACACTTCAATCCAATTTTCGTCAG TTTCTTCACAATCTCCGATTTCGAACCCTAATTTGTTGTCATGACTGAGGTAAACCCTTTCTTCACCCCCAATCCCAATT CCCAATTCGTAGAATTTATACAATTTTCAATTTTTTTTAATAAAGATGTGTGTTTCCGTACACAAATTTGTGCTCATCAT GGAAAATAAAGAAAAAAATTTCATCTTGAAGTTAGTTCTATTGTGATATATCTAAAATCCAAATTAATGTAAAAATATAT ATATTTGTTTTGTGACAATTCTCATAATCAGAAGGAAGAAAATCACTAACTATATTTTAGGGGAAGTGTTAGCTGTGTGC ATACAATTTTTACAATTTTCTGATATGTGAATGTTAGGCTTGTTGGTTGTGATGAATTGCTTGGATGCATTATATGGTTT TTGTTGACTTTTATCTATTTACTGTTTGTTCTTGTTTTCAGTACTGGGTCAGCCAGGGCAACAAATGGTGTGATTTTTGC AAAATTTATATATCGAACAATCCTTCGAGCATAAGAAATCATGAGCTCGGTACACGTCACAAGGATAATGTTGCCAAGAG GCTGGCTGCTATGCGAAAAGAGAATACTGCCAAGGAGAAAGAGCATAAGGAAACTGCTCAAGCCCTTGAGCAAATCGAAG CTGTAAGACTTCTCATCCTATTTTATGTTGCTGATGCTGCTTTCTTCATTGTCTGGGAGATTATTCATGATATTCAACAT TTGCATGAGCTTTATTTCCATGTCCGTGCCTTATGTCTAATTTCATTGGAATACGTACTAGAGAGTTTACATATATATGT CATTAATCATACTTACATATGGTGTAAACCAGCCGAGAAATTCAAAATTACATTAGTAGTCTATTCTGAAGATTATTTGC AAGTTTCTTAGCCTATTCTCAAGTGGAATCTACTTAATATTTTAGTAAATACTCGTAAAAAAATTTCCATATTCTTCTCC TTATTATATTATTAACTCAAATATCTATGCCCTTCATGCTACATGAAATATCTCATATATCAATAAGACAGCAACTGACT TTATTTTAATCAATAAGTCAATTGACAACAACTCAGCCCTGTGATCAGTACCACTGTGATGATTAACAATTAAATCACAA ATGAAAATAAGCTCTTCTGAGAAAGCTATCTGCAATACATGCAAGCTCTCACATGAAACAATAATATTATAATCCATGTG CATTAGGTTGCAAAATTAGTTTTTATAAAGCTGAGTTCCAATAAAGTTATGTTGAATATTAAGGTTATGGAAAAATTAGT TTTTATAATCCATGTGCATTATGTTTTAAAAAATGTAAGAACAGGTTTGAAAGCAACTAAATACACAACCTGGAGTGTGT TGATATATTAGTAAGCAAAGAGAAAATGAAAGGAAATGGCTCTTGGTATTTGAGAGGTCTAGTCCAATTCCAAATTTCAG TATCCCTTCCCCTTCTTGCCCTCTCGGATCATATACACATTACAACCACACTCACGTTTCCCACCCTTTTACTACTCGGC AATTAGTTACTGCATCTTTTCTCTCTTTGAGTTGATGAGGTGCACACCTTTTTCGCTGCTCACATACACTTCAGGGTGGT CTGCATCAGCTTCCATAGCATTTTACCCTCCTTATTCCTGCCTCAAAGCCTATGAGTGTTATCAGAATGAACTGAGTCAA AGTGAGAGAACATATATAGTTGTCACAAAATATGCTAGCAAATTCTTCATGATAGCAGTTGCTGCTGGATAATGTAAAAA CCAATGAGCAGAACTTTTCTAGCTAGACCAACACATAATGCACATATTCATAGCTAGCAATACTTTCTTTGACACTCTCT TTTCAACACTTTCTCTATATCTCAAGCGGATCCCACTATATCATTCAAATATTCCAAATCACTATGAAAATATCACTATG CAAATATTACCAATTAAATCTTCGTACTTGCACCAGTGTTATACAGAATAACAGAATATATTGTTTGATTTCCATGTCAA GAAGACTTTCGACACAAGGAGCCAAAGGGATAGTTTATAATTGTATACTTCTTGATCCATGATTCATGTGAGGAATAGAA CCACCAAAATATGCTAAATCTAGTTAGAAGTGTTATGATGGGATTGAATCCATGATTCATGTGAGGATTCAGGAAGAAGC ATGATGAGCTTTGATGTCACAAATTGGCCATCGAAAAAACATAAGCTATTGGGTGAAATGGGTGATACCATATCATGAAC CAACGCAAAAGCTAAAACTATTGAGGCAAAGCATATAAATGATTTTTATATTTAAGAAGGGTATTGGATTCCCAAAGTTA TTCCTCAAGTAAAATGTTGTCTGTATTCCGAGATTCGGGAATGAACTGGTAGCAGGGCATTCACATAATCACACTTCTAT TAATGGTTAAGTTTTGGCAAGTCTGAGATATAAACATGACTCGAATACTGTTAGTGCATGTATTATAATCATCTATATAT AAATTTTGATCATATCTATTTCTTTGTATTCTAATACAGAAAGCACAGCGTAGCTATCAAAAGGATAAAGCAAAGCTTGA GGAAGCCAGAGAATGGCATGAATTGGATGCCGAAGGTTGTAAGTATGAACTTTTGTTTATTTGATTTCTCTTGATAGAGT TCTAGTTAATAATTGATATGCATAATCTGATACATATTTTGACATTTGAGCTGTGTTTAGACCTATTAGACTGATTTTAT AGGGAATGATTAGTGTCTTCTACAAAGAAAACAAGGATTTTGGTGTCAACTCAATTAGGAGAGCCCCATCTCCAGAAATT ACTGAACATTCTGTGGTCTTTCAAAGCATTGCAAAGAAATTTTATGCCACACTTCTCTGCTAAGATGATTAGTAATTTAG TATCACACTTGTAAAAGGCCAGAACTTTTATACGTGTAAAAGTGGATGTGCCAAACAAGTCATAGAGTTTGAAGCTGAAT GTCGTGCAAGATGCACTCATCACAGAATTAACTTCAGAAGTAAAGTAAAAGAAGTAAGGAAATAAGGAGTTGGAGTTCAT TATAGGTAGTAAAAGTATGGTAGTCTGTTGTTTTTAAGAAACTTGGTCTACTCTCACTTGTTTTCTAATTATCTTCATGA TCTTTTCTGTTGAATTTTCATTTTCTCTGCATAACCGTTTAATCTGGTATATCCATGCAGCTTTATACATTGGGTCATGG ACACAAACCCAGATCAAAATAGATGTCAGTGATTTTCATTATTGCTGTATTGATATTTGGTCTTTAACGCTGATTTTCAA TGGATGATTTGATTTCGTAGAATGGGACTTTGAAAGCAGTTCAGGCTATTACTACCATAAAACAAATGGATTTTATTATG ATCCGAAGTCGGGATTTTACTACTCTGACGCCATAGGTATGACTGTATGAGTTATATTTGATTTACATGTAAATTATAAT AGATTGTAGTATTTTTTAATGCCTAAAAATTGTCAATATTAAGTTTTGTCCCTGACTTTTGAAACACCTCATTTTTTTTT AATAGTCTCATTCTAGTCCTCAACAGATACTTCTTAATTCTATATTTTAGATTTTGGTGCAAACTGATGTATGTTAGACA ACGGGCAAGTGCCCATAAATGTTGTTTACTATTGATACCACCTGTTTTTGTATGGTTTGGATCATCATCTTATTAATGTC AAGGACAAGAGTCAGACTATTTTTATAAAAAAAATGAAAGAACAAAGTGGGACATTTTTTAAATTAGGGACTAAAACAAA GTATTTGATATTTTAGAGGGACTAAACATACTTTACCTGTAGTAATATTAAGTTTATACTTGAAAGTGGATGGCTTATTT ACTTAGAGAAATTTCAACAGGCAAGTGGGTGACCCAGGAAGAAGCATATGCCTCACCTCACTTTGCTTCAACTACGAAAA AGGCCTCGTCAACTTCACAATCAAACAAAGGAAACAAGCCTCATAATGGACCTTTACCTGGGAGAGTTGTTACAACTTCT TTGAATCCCACGAGAAATGTAAAAGCTGCTCCTTCATCTCTTTCTCTTGGTAAGAGAAAAAGACCTGGTGAAAAACCCAA GGTTGTCTCTGAAGAAGAAAAATCAGCTCTCAAGGCAAGAGAGGCTGCAAGGAAGAGAGTACAGGAAAGGGAGAAATCCT TGCTTGGTCTATACAGCAAGCCTTACTAATTGGGGAAACTTGACTAAGTAGTCTTGACTTCCCCCAATAATTTGAGGGTT ATATTTCCTTTTCCAGATTTTATGCTGTCATTAAGTGGATGTTAATTCCATAAGTGTTTTTTTTTCATGTGTTTACCTTG TAAATTTTATGTAACTGTTACATTTTTTGCAATACTTGCTCATTTTAAGTCGTATTTGTATGTGTTTTCGGGAATGGATC ATAGGGGTTAAAACTTAAAAGTTCTGAGTTAGGCTGCAGAAGTTTTTTCAAGAATACAGGCTAATCCTTGTGTAATATAC AGATATGGAAAGTAATGCACATTTTATGTTTCTTTTGTATTTGAGTAACAGCCTTAAGATGAGGGAGATCCTAAATGCAT AGAGGTTGGGGTTGGAAAGAGAGGTGGCTAGACAATAGACTGTGACAGTTTTTGTTTTCCCTTCAGTGGGAGGGATAATG ATCTGGCCTTAATCTCCTCATCTATAGGCAATCAAATTTACCTTCTCTTGGTAAAATACACATATTTTCTTGGCTTAATT GCACTTTTGCTCCCTGATCTTTCACCTTTGTGCGATTTACCTCCCTCATCTTTAAAATGAGCGAATTCCCTCCCTCTTCT ATTAATATGTGTGATTTATGTCCTTCCGTTAGTTAGCCGTCCAATTGCTAACGGTGGTTGCTATTTTCACCCCCCCTTTT ACTAACCACACCCCCTTATCAGAAATAAAAATAAAAAATAAACGAAATAAATTAAATAAAATTAATAGAA
CDS sequence (LotjaGi4g1v0071400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGAGTACTGGGTCAGCCAGGGCAACAAATGGTGTGATTTTTGCAAAATTTATATATCGAACAATCCTTCGAGCAT AAGAAATCATGAGCTCGGTACACGTCACAAGGATAATGTTGCCAAGAGGCTGGCTGCTATGCGAAAAGAGAATACTGCCA AGGAGAAAGAGCATAAGGAAACTGCTCAAGCCCTTGAGCAAATCGAAGCTAAAGCACAGCGTAGCTATCAAAAGGATAAA GCAAAGCTTGAGGAAGCCAGAGAATGGCATGAATTGGATGCCGAAGAATGGGACTTTGAAAGCAGTTCAGGCTATTACTA CCATAAAACAAATGGATTTTATTATGATCCGAAGTCGGGATTTTACTACTCTGACGCCATAGGCAAGTGGGTGACCCAGG AAGAAGCATATGCCTCACCTCACTTTGCTTCAACTACGAAAAAGGCCTCGTCAACTTCACAATCAAACAAAGGAAACAAG CCTCATAATGGACCTTTACCTGGGAGAGTTGTTACAACTTCTTTGAATCCCACGAGAAATGTAAAAGCTGCTCCTTCATC TCTTTCTCTTGGTAAGAGAAAAAGACCTGGTGAAAAACCCAAGGTTGTCTCTGAAGAAGAAAAATCAGCTCTCAAGGCAA GAGAGGCTGCAAGGAAGAGAGTACAGGAAAGGGAGAAATCCTTGCTTGGTCTATACAGCAAGCCTTACTAA
Protein sequence (LotjaGi4g1v0071400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEYWVSQGNKWCDFCKIYISNNPSSIRNHELGTRHKDNVAKRLAAMRKENTAKEKEHKETAQALEQIEAKAQRSYQKDK AKLEEAREWHELDAEEWDFESSSGYYYHKTNGFYYDPKSGFYYSDAIGKWVTQEEAYASPHFASTTKKASSTSQSNKGNK PHNGPLPGRVVTTSLNPTRNVKAAPSSLSLGKRKRPGEKPKVVSEEEKSALKAREAARKRVQEREKSLLGLYSKPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 85 | 85 | 4.6E-64 | ||
| Gene3D | 1 | 80 | 80 | 2.2E-6 | – | |
| SMART | 8 | 43 | 36 | 2.5E-6 | ||
| ProSiteProfiles | 11 | 42 | 32 | 9.691 | ||
| Pfam | 11 | 43 | 33 | 6.7E-8 | ||
| SUPERFAMILY | 12 | 55 | 44 | 3.27E-6 | ||
| Coils | 37 | 71 | 35 | - | – | |
| PANTHER | 93 | 232 | 140 | 4.6E-64 | ||
| Pfam | 93 | 143 | 51 | 2.1E-13 | ||
| MobiDBLite | 142 | 161 | 20 | - | – | |
| MobiDBLite | 142 | 218 | 77 | - | – | |
| MobiDBLite | 169 | 185 | 17 | - | – | |
| MobiDBLite | 192 | 218 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0071400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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