Domain Predictions — View

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PS00177

Source: ProSitePatterns

Description

DNA topoisomerase II signature.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of GO:0003676
GO:0003918 View details of GO:0003918 AmiGO InterPro QuickGO	Molecular function	DNA topoisomerase type II (ATP-hydrolyzing) activity	Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.	Subterm of GO:0008094 GO:0061505
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639
GO:0006265 View details of GO:0006265 AmiGO InterPro QuickGO	Biological process	DNA topological change	The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.	Subterm of GO:0006259 GO:0071103

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v0826110.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 2-like [Glycine max] gi\|356555329\|ref\|XP_003545986.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.10.268.10 G3DSA:3.30.1360.40 G3DSA:3.30.1490.30 G3DSA:3.40.50.670 G3DSA:3.90.199.10 IPR001154 IPR001241 IPR002205 IPR006171 IPR013757 IPR013758 IPR013759 IPR013760 IPR018522 IPR024946 IPR031660 NON_CYTOPLASMIC_DOMAIN PF00521 PF01751 PF16898 PR00418 PR01158 PS00177 PS50880 PTHR10169 PTHR10169:SF38 SM00433 SM00434 SSF56719 TRANSMEMBRANE cd00187 cd03365 mobidb-lite	35
Lj4g3v1154490.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: two-component response regulator-like APRR2-like isoform X1 [Cicer arietinum] gi\|502152594\|ref\|XP_004508999.1\|	Domains G3DSA:1.10.10.60 G3DSA:3.40.50.2300 IPR001005 IPR001789 IPR006447 IPR009057 IPR011006 IPR017930 IPR018522 PF00072 PF00249 PS00177 PS50110 PS51294 PTHR31312 PTHR31312:SF2 SSF46689 SSF52172 TIGR01557 cd00156 mobidb-lite	21
LotjaGi1g1v0663600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA gyrase subunit B; TAIR: AT5G04130.1 DNA GYRASE B2; Swiss-Prot: sp\|Q5YLB4\|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|A0A151TTM7\|A0A151TTM7_CAJCA DNA gyrase subunit B; Found in the gene: LotjaGi1g1v0663600	Domains G3DSA:3.30.230.10 G3DSA:3.30.565.10 G3DSA:3.40.50.670 IPR000565 IPR001241 IPR002288 IPR003594 IPR006171 IPR011557 IPR013506 IPR013759 IPR013760 IPR014721 IPR018522 IPR020568 IPR034160 IPR036890 NON_CYTOPLASMIC_DOMAIN PF00204 PF00986 PF01751 PF02518 PR00418 PR01159 PS00177 PS50880 PTHR45866 PTHR45866:SF7 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00387 SM00433 SSF54211 SSF55874 SSF56719 TIGR01059 cd00822 cd03366 cd16928	41
LotjaGi3g1v0121000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 2; TAIR: AT3G23890.1 topoisomerase II; Swiss-Prot: sp\|O24308\|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr\|I1MJQ7\|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000	Domains Coil G3DSA:1.10.268.10 G3DSA:3.30.1360.40 G3DSA:3.30.1490.30 G3DSA:3.30.230.10 G3DSA:3.30.565.10 G3DSA:3.40.50.670 G3DSA:3.90.199.10 IPR001154 IPR001241 IPR002205 IPR003594 IPR006171 IPR013506 IPR013757 IPR013758 IPR013759 IPR013760 IPR014721 IPR018522 IPR020568 IPR031660 IPR034157 IPR036890 PF00204 PF00521 PF01751 PF02518 PF16898 PR00418 PR01158 PS00177 PS50880 PTHR10169 PTHR10169:SF38 SM00433 SM00434 SSF54211 SSF55874 SSF56719 cd00187 cd03365 cd03481 cd16930 mobidb-lite	45
LotjaGi3g1v0121000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase 2; TAIR: AT3G23890.2 topoisomerase II; Swiss-Prot: sp\|O24308\|TOP2_PEA DNA topoisomerase 2; TrEMBL-Plants: tr\|I1MJQ7\|I1MJQ7_SOYBN DNA topoisomerase 2; Found in the gene: LotjaGi3g1v0121000	Domains Coil G3DSA:1.10.268.10 G3DSA:3.30.1360.40 G3DSA:3.30.1490.30 G3DSA:3.30.230.10 G3DSA:3.30.565.10 G3DSA:3.40.50.670 G3DSA:3.90.199.10 IPR001154 IPR001241 IPR002205 IPR003594 IPR006171 IPR013506 IPR013757 IPR013758 IPR013759 IPR013760 IPR014721 IPR018522 IPR020568 IPR031660 IPR034157 IPR036890 PF00204 PF00521 PF01751 PF02518 PF16898 PR00418 PR01158 PS00177 PS50880 PTHR10169 PTHR10169:SF38 SM00433 SM00434 SSF54211 SSF55874 SSF56719 cd00187 cd03365 cd03481 cd16930 mobidb-lite	45
LotjaGi4g1v0190400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Two-component response regulator-like protein; TAIR: AT4G18020.1 CheY-like two-component responsive regulator family protein; Swiss-Prot: sp\|Q6LA43\|APRR2_ARATH Two-component response regulator-like APRR2; TrEMBL-Plants: tr\|A0A072V0B2\|A0A072V0B2_MEDTR Two-component response regulator-APRR2-like protein; Found in the gene: LotjaGi4g1v0190400	Domains G3DSA:1.10.10.60 G3DSA:3.40.50.2300 IPR001005 IPR001789 IPR006447 IPR009057 IPR011006 IPR017930 IPR018522 PF00072 PF00249 PS00177 PS50110 PS51294 PTHR31312 PTHR31312:SF6 SM00448 SSF46689 SSF52172 TIGR01557 cd00156 mobidb-lite	22
LotjaGi4g1v0190400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Two-component response regulator-like protein; TAIR: AT4G18020.1 CheY-like two-component responsive regulator family protein; Swiss-Prot: sp\|Q6LA43\|APRR2_ARATH Two-component response regulator-like APRR2; TrEMBL-Plants: tr\|A0A072UR72\|A0A072UR72_MEDTR Two-component response regulator-APRR2-like protein; Found in the gene: LotjaGi4g1v0190400	Domains G3DSA:1.10.10.60 G3DSA:3.40.50.2300 IPR001005 IPR001789 IPR006447 IPR009057 IPR011006 IPR017930 IPR018522 PF00072 PF00249 PS00177 PS50110 PS51294 PTHR31312 PTHR31312:SF6 SM00448 SSF46689 SSF52172 TIGR01557 cd00156 mobidb-lite	22
LotjaGi4g1v0190400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Two-component response regulator-like protein; TAIR: AT4G18020.1 CheY-like two-component responsive regulator family protein; Swiss-Prot: sp\|Q6LA43\|APRR2_ARATH Two-component response regulator-like APRR2; TrEMBL-Plants: tr\|A0A072UR72\|A0A072UR72_MEDTR Two-component response regulator-APRR2-like protein; Found in the gene: LotjaGi4g1v0190400	Domains G3DSA:1.10.10.60 G3DSA:3.40.50.2300 IPR001005 IPR001789 IPR006447 IPR009057 IPR011006 IPR017930 IPR018522 PF00072 PF00249 PS00177 PS50110 PS51294 PTHR31312 PTHR31312:SF6 SM00448 SSF46689 SSF52172 TIGR01557 cd00156 mobidb-lite	22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	12.50