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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0826110 |
| Transcript ID | Lj3g3v0826110.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA topoisomerase 2-like [Glycine max] gi|356555329|ref|XP_003545986.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 280 | 280 | 1.90E-18 | ||
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 6 | 26 | 21 | – | – | |
| PANTHER | 13 | 844 | 832 | 0 | – | |
| PANTHER | 13 | 844 | 832 | 0 | – | |
| Phobius | 27 | 857 | 831 | – | – | |
| Gene3D | 35 | 204 | 170 | 1.90E-60 | ||
| SUPERFAMILY | 42 | 785 | 744 | 3.53E-245 | ||
| PRINTS | 50 | 60 | 11 | 6.90E-87 | ||
| ProSiteProfiles | 65 | 179 | 115 | 17.441 | ||
| CDD | 65 | 183 | 119 | 5.01E-80 | – | |
| PRINTS | 65 | 72 | 8 | 6.90E-87 | ||
| PRINTS | 67 | 81 | 15 | 3.40E-27 | ||
| Pfam | 67 | 170 | 104 | 5.90E-08 | ||
| ProSitePatterns | 69 | 77 | 9 | – | ||
| PRINTS | 113 | 126 | 14 | 6.90E-87 | ||
| PRINTS | 137 | 153 | 17 | 3.40E-27 | ||
| PRINTS | 155 | 172 | 18 | 3.40E-27 | ||
| PRINTS | 156 | 171 | 16 | 6.90E-87 | ||
| PRINTS | 176 | 188 | 13 | 3.40E-27 | ||
| PRINTS | 177 | 188 | 12 | 6.90E-87 | ||
| Pfam | 181 | 308 | 128 | 8.40E-48 | ||
| Gene3D | 205 | 238 | 34 | 4.90E-21 | – | |
| PRINTS | 220 | 236 | 17 | 3.40E-27 | ||
| PRINTS | 226 | 238 | 13 | 6.90E-87 | ||
| SMART | 291 | 770 | 480 | 1.30E-210 | ||
| CDD | 310 | 775 | 466 | 4.84E-140 | – | |
| Pfam | 311 | 773 | 463 | 2.40E-129 | ||
| Gene3D | 313 | 493 | 181 | 5.30E-65 | ||
| PRINTS | 339 | 362 | 24 | 6.90E-87 | ||
| PRINTS | 386 | 408 | 23 | 6.90E-87 | ||
| PRINTS | 416 | 436 | 21 | 6.90E-87 | ||
| Gene3D | 494 | 597 | 104 | 7.00E-27 | ||
| PRINTS | 522 | 536 | 15 | 6.90E-87 | ||
| PRINTS | 606 | 632 | 27 | 6.90E-87 | ||
| Gene3D | 613 | 788 | 176 | 1.90E-47 | ||
| MobiDBLite | 682 | 717 | 36 | – | – | |
| Coils | 742 | 762 | 21 | – | – | |
| Coils | 765 | 792 | 28 | – | – | |
| MobiDBLite | 780 | 843 | 64 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase type II (ATP-hydrolyzing) activity | Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of Lj3g3v0826110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0826110.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.