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Lj1g3v3328940.1

Overview

Field Value
Gene ID Lj1g3v3328940
Transcript ID Lj1g3v3328940.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum] gi|502127199|ref|XP_004499600.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 40 40 – –
SignalP
SignalP-TM_GRAM_POSITIVE
1 37 37 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 19 19 – –
PANTHER
PTHR10745:SF6
3 722 720 0 –
PANTHER
PTHR10745
3 722 720 0
IPR027031
Phobius
SIGNAL_PEPTIDE_H_REGION
20 28 9 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
29 40 12 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
41 722 682 – –
ProSiteProfiles
PS51185
47 103 57 10.789
IPR000738
SUPERFAMILY
SSF47060
50 92 43 9.42E-07
IPR009068
SMART
SM00991
51 107 57 6.30E-07
IPR000738
Gene3D
G3DSA:1.10.287.10
53 87 35 8.30E-09
IPR009068
Pfam
PF00458
53 88 36 6.70E-10
IPR000738
Gene3D
G3DSA:3.30.930.10
111 194 84 1.80E-129 –
TIGRFAM
TIGR00389
112 698 587 5.30E-207
IPR002315
SUPERFAMILY
SSF55681
112 349 238 2.28E-119 –
CDD
cd00774
115 459 345 1.22E-109
IPR033731
PRINTS
PR01043
129 143 15 6.00E-58
IPR002315
ProSiteProfiles
PS50862
248 589 342 11.949
IPR006195
Gene3D
G3DSA:3.30.930.10
263 349 87 1.80E-129 –
PRINTS
PR01043
266 278 13 6.00E-58
IPR002315
PRINTS
PR01043
285 302 18 6.00E-58
IPR002315
Pfam
PF00587
285 583 299 6.10E-10
IPR002314
PRINTS
PR01043
317 334 18 6.00E-58
IPR002315
PRINTS
PR01043
334 344 11 6.00E-58
IPR002315
SUPERFAMILY
SSF55681
392 470 79 2.28E-119 –
Gene3D
G3DSA:3.30.930.10
392 487 96 1.80E-129 –
Gene3D
G3DSA:3.30.930.10
554 583 30 1.80E-129 –
SUPERFAMILY
SSF55681
559 613 55 2.28E-119 –
PRINTS
PR01043
564 576 13 6.00E-58
IPR002315
CDD
cd00858
580 700 121 4.28E-47 –
SUPERFAMILY
SSF52954
599 714 116 2.45E-27
IPR004154
Gene3D
G3DSA:3.40.50.800
602 714 113 1.80E-32
IPR004154
Pfam
PF03129
610 697 88 2.10E-17
IPR004154
PRINTS
PR01043
649 668 20 6.00E-58
IPR002315

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004820
Molecular function Glycine-tRNA ligase activity Catalysis of the reaction: ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of
GO:0006426
Biological process Glycyl-tRNA aminoacylation The process of coupling glycine to glycyl-tRNA, catalyzed by glycyl-tRNA synthetase. The glycyll-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a glycine-accepting tRNA.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v3328940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3328940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.