Domain Predictions — View

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TIGR01051

Source: TIGRFAM

Description

topA_bact: DNA topoisomerase I

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of GO:0003676
GO:0003917 View details of GO:0003917 AmiGO InterPro QuickGO	Molecular function	DNA topoisomerase type I activity	Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle.	Subterm of GO:0003916
GO:0006265 View details of GO:0006265 AmiGO InterPro QuickGO	Biological process	DNA topological change	The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.	Subterm of GO:0006259 GO:0071103

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v0611970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi\|502124515\|ref\|XP_004498560.1\|	Domains G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR023405 IPR023406 IPR025589 IPR028612 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF27 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	34
Lj5g3v0611970.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi\|502124515\|ref\|XP_004498560.1\|	Domains G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR023405 IPR023406 IPR025589 IPR028612 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF27 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	34
LotjaGi5g1v0067100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|Q4UM42\|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr\|K7M6M6\|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR025589 IPR028612 IPR034149 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR42785 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	36
LotjaGi5g1v0067100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|Q4UM42\|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr\|K7M6M6\|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR025589 IPR028612 IPR034149 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR42785 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	36

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00