Domain Predictions — View

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SM00493

Source: SMART

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v0611970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi\|502124515\|ref\|XP_004498560.1\|	Domains G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR023405 IPR023406 IPR025589 IPR028612 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF27 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	34
Lj5g3v0611970.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi\|502124515\|ref\|XP_004498560.1\|	Domains G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR023405 IPR023406 IPR025589 IPR028612 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF27 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	34
Lj6g3v1618200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Toprim domain-containing protein isoform 4 [Theobroma cacao] gi\|508778400\|gb\|EOY25656.1\|	Domains G3DSA:3.40.1360.10 IPR006171 IPR027032 PF13662 PTHR12873 PTHR12873:SF2 SM00493 SSF56731 SignalP-TM_GRAM_POSITIVE cd01029	10
Lj6g3v1618290.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA primase/helicase-like [Cicer arietinum] gi\|502163739\|ref\|XP_004512933.1\|	Domains G3DSA:3.40.1360.10 G3DSA:3.40.50.300 IPR006171 IPR007694 IPR027032 IPR027417 PF03796 PF13662 PS51199 PTHR12873 SM00493 SSF52540 SSF56731 SignalP-TM_GRAM_POSITIVE cd01029	15
LotjaGi1g1v0321800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp\|Q9LVP1\|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr\|A0A0S3RFA9\|A0A0S3RFA9_PHAAN DNA topoisomerase; Found in the gene: LotjaGi1g1v0321800	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 G3DSA:4.10.60.10 IPR000380 IPR001878 IPR003601 IPR003602 IPR006171 IPR010666 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 IPR036875 PF00098 PF01131 PF01396 PF01751 PF06839 PR00417 PS00396 PS50158 PS50880 PTHR11390 PTHR11390:SF21 SM00343 SM00436 SM00437 SM00493 SSF56712 SSF57756 cd00186 cd03362 mobidb-lite	40
LotjaGi5g1v0067100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|Q4UM42\|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr\|K7M6M6\|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR025589 IPR028612 IPR034149 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR42785 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	36
LotjaGi5g1v0067100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase family protein; TAIR: AT4G31210.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|Q4UM42\|TOP1_RICFE DNA topoisomerase 1; TrEMBL-Plants: tr\|K7M6M6\|K7M6M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR005733 IPR006171 IPR013497 IPR013498 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR025589 IPR028612 IPR034149 MF_00952 PF01131 PF01396 PF01751 PF13368 PR00417 PS00396 PS50880 PTHR42785 SM00436 SM00437 SM00493 SSF56712 TIGR01051 cd00186 cd03363 mobidb-lite	36
LotjaGi6g1v0103100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|I1LN46\|I1LN46_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 PF01131 PF01751 PR00417 PS00396 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SM00493 SSF56712 cd00186 cd03362 mobidb-lite	28
LotjaGi6g1v0103100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|I1LN46\|I1LN46_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 PF01131 PF01751 PR00417 PS00396 PS50880 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SM00493 SSF56712 cd00186 cd03362 mobidb-lite	29
LotjaGi6g1v0103100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA topoisomerase; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp\|F4ISQ7\|TOP3B_ARATH DNA topoisomerase 3-beta; TrEMBL-Plants: tr\|I1LN46\|I1LN46_SOYBN DNA topoisomerase; Found in the gene: LotjaGi6g1v0103100	Domains G3DSA:1.10.290.10 G3DSA:1.10.460.10 G3DSA:2.70.20.10 G3DSA:3.40.50.140 IPR000380 IPR003601 IPR003602 IPR006171 IPR013497 IPR013824 IPR013825 IPR013826 IPR023405 IPR023406 IPR034144 PF01131 PF01751 PR00417 PS00396 PTHR11390 PTHR11390:SF20 SM00436 SM00437 SM00493 SSF56712 cd00186 cd03362 mobidb-lite	28
LotjaGi6g1v0266300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nucleic acid-binding protein, putative; TAIR: AT1G30680.1 toprim domain-containing protein; Swiss-Prot: sp\|B5X582\|TWIH_ARATH Twinkle homolog protein, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|I3SNI9\|I3SNI9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0266300	Domains G3DSA:3.40.1360.10 IPR006171 IPR034154 PF13662 PTHR12873 PTHR12873:SF1 SM00493 SSF56731 SignalP-TM cd01029	10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd01029	CDD	1	9.09