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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0611970 |
| Transcript ID | Lj5g3v0611970.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA topoisomerase 1-like isoform X1 [Cicer arietinum] gi|502124515|ref|XP_004498560.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 140 | 230 | 91 | – | – | |
| PANTHER | 235 | 965 | 731 | 0 | – | |
| PANTHER | 235 | 965 | 731 | 0 | ||
| CDD | 238 | 365 | 128 | 3.11E-51 | – | |
| SUPERFAMILY | 238 | 823 | 586 | 3.53E-161 | ||
| SMART | 238 | 338 | 101 | 2.10E-17 | ||
| ProSiteProfiles | 238 | 353 | 116 | 23.248 | ||
| Gene3D | 238 | 374 | 137 | 1.20E-34 | ||
| Hamap | 238 | 988 | 751 | 44.437 | ||
| Pfam | 240 | 353 | 114 | 1.90E-20 | ||
| TIGRFAM | 241 | 887 | 647 | 2.50E-204 | ||
| PRINTS | 312 | 325 | 14 | 1.70E-30 | ||
| SMART | 344 | 432 | 89 | 1.90E-43 | ||
| Pfam | 368 | 808 | 441 | 2.30E-111 | ||
| CDD | 371 | 819 | 449 | 1.06E-126 | ||
| Gene3D | 375 | 422 | 48 | 2.20E-52 | ||
| PRINTS | 402 | 420 | 19 | 1.70E-30 | ||
| Gene3D | 424 | 562 | 139 | 6.00E-24 | ||
| SMART | 491 | 772 | 282 | 4.40E-92 | ||
| ProSitePatterns | 528 | 551 | 24 | – | ||
| PRINTS | 542 | 551 | 10 | 1.70E-30 | ||
| Gene3D | 568 | 718 | 151 | 4.10E-23 | ||
| PRINTS | 620 | 636 | 17 | 1.70E-30 | ||
| Gene3D | 719 | 858 | 140 | 2.20E-52 | ||
| PRINTS | 735 | 749 | 15 | 1.70E-30 | ||
| SUPERFAMILY | 852 | 861 | 10 | 3.53E-161 | ||
| Pfam | 852 | 888 | 37 | 4.20E-08 | ||
| Pfam | 918 | 976 | 59 | 7.80E-08 | ||
| MobiDBLite | 1028 | 1048 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase activity | Catalysis of the transient cleavage and passage of individual DNA strands or double helices through one another, resulting a topological transformation in double-stranded DNA. | ||
| Molecular function | DNA topoisomerase type I activity | Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle. | ||
| Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of Lj5g3v0611970.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0611970.2, powered by CORGI.
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