Domain Predictions — View

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TIGR03591

Source: TIGRFAM

Description

polynuc_phos: polyribonucleotide nucleotidyltransferase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of GO:0003676
GO:0004654 View details of GO:0004654 AmiGO InterPro QuickGO	Molecular function	Polyribonucleotide nucleotidyltransferase activity	Catalysis of the reaction: RNA(n+1) + phosphate <=> RNA(n) + a nucleoside diphosphate.	Subterm of GO:0016779
GO:0006402 View details of GO:0006402 AmiGO InterPro QuickGO	Biological process	MRNA catabolic process	The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.	Subterm of GO:0006401 GO:0010629 GO:0016071

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3979350.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi\|502107284\|ref\|XP_004493216.1\|	Domains G3DSA:1.10.10.400 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004087 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 MF_01595 PF00013 PF00575 PF01138 PF03725 PS50084 PS50126 PTHR11252 PTHR11252:SF0 SM00316 SM00322 SSF46915 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd02393 cd04472 cd11364 mobidb-lite	36
Lj2g3v0947360.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi\|502090489\|ref\|XP_004489245.1\|	Domains G3DSA:1.10.10.400 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 MF_01595 PF00013 PF00575 PF01138 PF03725 PF03726 PS50084 PS50126 PTHR11252 PTHR11252:SF3 SM00316 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd11363 cd11364 mobidb-lite	33
LotjaGi1g1v0648200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT3G03710.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp\|Q69LE7\|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; TrEMBL-Plants: tr\|G7L1J6\|G7L1J6_MEDTR Polyribonucleotide nucleotidyltransferase; Found in the gene: LotjaGi1g1v0648200	Domains G3DSA:2.40.50.140 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004087 IPR004088 IPR012162 IPR012340 IPR015847 IPR020568 IPR022967 IPR027408 IPR036345 IPR036456 IPR036612 MF_01595 PF00013 PF00575 PF01138 PF03725 PS50084 PS50126 PTHR11252 PTHR11252:SF0 SM00316 SM00322 SSF46915 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd02393 cd04472 cd11364 mobidb-lite	36
LotjaGi2g1v0243700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp\|Q9S7G6\|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr\|V7C0V9\|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700	Domains G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 IPR036345 IPR036612 PF00013 PF00575 PF01138 PF03725 PF03726 PS50084 PS50126 PTHR11252 PTHR11252:SF11 SM00316 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd11364 mobidb-lite	32
LotjaGi2g1v0243700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp\|Q9S7G6\|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr\|V7C0V9\|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700	Domains G3DSA:2.40.50.140 G3DSA:3.30.1370.10 G3DSA:3.30.230.70 IPR001247 IPR003029 IPR004088 IPR012162 IPR012340 IPR015847 IPR015848 IPR020568 IPR022967 IPR027408 IPR036345 IPR036612 MF_01595 PF00013 PF00575 PF01138 PF03725 PF03726 PS50084 PS50126 PTHR11252 PTHR11252:SF11 SM00316 SSF50249 SSF54211 SSF54791 SSF55666 TIGR03591 cd04472 cd11363 cd11364 mobidb-lite	35

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00