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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3979350 |
| Transcript ID | Lj1g3v3979350.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 78 | 371 | 294 | 0 | ||
| PANTHER | 78 | 371 | 294 | 0 | – | |
| Hamap | 81 | 829 | 749 | 26.017 | ||
| SUPERFAMILY | 84 | 222 | 139 | 1.47E-41 | ||
| Gene3D | 85 | 303 | 219 | 3.20E-73 | ||
| Pfam | 92 | 222 | 131 | 8.20E-17 | ||
| SUPERFAMILY | 225 | 309 | 85 | 9.69E-23 | ||
| Pfam | 227 | 289 | 63 | 3.70E-15 | ||
| Gene3D | 304 | 365 | 62 | 1.60E-12 | ||
| SUPERFAMILY | 317 | 363 | 47 | 3.40E-08 | ||
| PANTHER | 415 | 902 | 488 | 0 | – | |
| PANTHER | 415 | 902 | 488 | 0 | ||
| SUPERFAMILY | 415 | 447 | 33 | 3.40E-08 | ||
| Gene3D | 415 | 441 | 27 | 1.60E-12 | ||
| TIGRFAM | 415 | 827 | 413 | 3.20E-162 | ||
| SUPERFAMILY | 424 | 596 | 173 | 1.11E-44 | ||
| Gene3D | 442 | 674 | 233 | 1.90E-76 | ||
| CDD | 450 | 678 | 229 | 5.34E-125 | – | |
| Pfam | 450 | 584 | 135 | 6.30E-20 | ||
| SUPERFAMILY | 578 | 679 | 102 | 1.70E-22 | ||
| SUPERFAMILY | 683 | 751 | 69 | 6.75E-11 | ||
| Gene3D | 685 | 752 | 68 | 9.40E-14 | ||
| SMART | 686 | 752 | 67 | 7.50E-05 | ||
| ProSiteProfiles | 687 | 747 | 61 | 10.441 | ||
| CDD | 687 | 747 | 61 | 1.21E-19 | – | |
| Pfam | 692 | 748 | 57 | 1.20E-04 | ||
| SUPERFAMILY | 750 | 831 | 82 | 3.88E-17 | ||
| Gene3D | 753 | 830 | 78 | 1.50E-20 | – | |
| SMART | 755 | 826 | 72 | 8.00E-23 | ||
| ProSiteProfiles | 757 | 826 | 70 | 19.009 | ||
| CDD | 757 | 825 | 69 | 7.53E-27 | – | |
| Pfam | 764 | 826 | 63 | 2.80E-12 | ||
| MobiDBLite | 825 | 922 | 98 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Polyribonucleotide nucleotidyltransferase activity | Catalysis of the reaction: RNA(n+1) + phosphate <=> RNA(n) + a nucleoside diphosphate. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Biological process | MRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. |
Expression pattern of Lj1g3v3979350.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3979350.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.