Domain Predictions — View

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cd13838

Source: CDD

Description

RNase_H_like_Prp8_IV

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v0044310.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: pre-mRNA-processing-splicing factor 8-like [Cicer arietinum] gi\|502080722\|ref\|XP_004486659.1\|	Domains Coil IPR000555 IPR012337 IPR012984 IPR019580 IPR019581 IPR019582 IPR021983 IPR027652 PF01398 PF08084 PF10596 PF10597 PF10598 PF12134 PTHR11140 PTHR11140:SF0 SM00232 SSF53098 cd08056 cd13838	21
LotjaGi3g1v0008200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp\|Q9SSD2\|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr\|V7BXW4\|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200	Domains Coil G3DSA:1.20.58.1750 G3DSA:1.20.80.40 G3DSA:3.30.420.230 G3DSA:3.40.140.10 G3DSA:3.90.1570.40 IPR000555 IPR012337 IPR012591 IPR012592 IPR012984 IPR019580 IPR019581 IPR019582 IPR021983 IPR027652 IPR037518 IPR042516 IPR043172 IPR043173 PF01398 PF08082 PF08083 PF08084 PF10596 PF10597 PF10598 PF12134 PS50249 PTHR11140 PTHR11140:SF1 SM00232 SSF53098 cd08056 cd13838 mobidb-lite	36
LotjaGi3g1v0008200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp\|Q9SSD2\|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr\|V7BXW4\|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200	Domains Coil G3DSA:1.20.58.1750 G3DSA:1.20.80.40 G3DSA:3.30.420.230 G3DSA:3.40.140.10 G3DSA:3.90.1570.40 IPR000555 IPR012337 IPR012591 IPR012592 IPR012984 IPR019580 IPR019581 IPR019582 IPR021983 IPR027652 IPR037518 IPR042516 IPR043172 IPR043173 PF01398 PF08082 PF08083 PF08084 PF10596 PF10597 PF10598 PF12134 PS50249 PTHR11140 PTHR11140:SF1 SM00232 SSF53098 cd08056 cd13838	35
LotjaGi3g1v0008200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp\|Q9SSD2\|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr\|V7BXW4\|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200	Domains Coil G3DSA:1.20.58.1750 G3DSA:1.20.80.40 G3DSA:3.30.420.230 G3DSA:3.40.140.10 G3DSA:3.90.1570.40 IPR000555 IPR012337 IPR012591 IPR012592 IPR012984 IPR019580 IPR019581 IPR019582 IPR021983 IPR027652 IPR037518 IPR042516 IPR043172 IPR043173 PF01398 PF08082 PF08083 PF08084 PF10596 PF10597 PF10598 PF12134 PS50249 PTHR11140 PTHR11140:SF1 SM00232 SSF53098 cd08056 cd13838	35
LotjaGi3g1v0008200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pre-mRNA-processing-splicing factor 8; TAIR: AT1G80070.1 Pre-mRNA-processing-splicing factor; Swiss-Prot: sp\|Q9SSD2\|PRP8A_ARATH Pre-mRNA-processing-splicing factor 8A; TrEMBL-Plants: tr\|V7BXW4\|V7BXW4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0008200	Domains Coil G3DSA:1.20.58.1750 G3DSA:1.20.80.40 G3DSA:3.30.420.230 G3DSA:3.40.140.10 G3DSA:3.90.1570.40 IPR000555 IPR012337 IPR012591 IPR012592 IPR012984 IPR019580 IPR019581 IPR019582 IPR021983 IPR027652 IPR037518 IPR042516 IPR043172 IPR043173 PF01398 PF08082 PF08083 PF08084 PF10596 PF10597 PF10598 PF12134 PS50249 PTHR11140 PTHR11140:SF1 SM00232 SSF53098 cd08056 cd13838	35

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd13838	CDD	1	20.00