Domain Predictions — View

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cd15517

Source: CDD

Description

PHD_TCF19_like

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0062699.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] gi\|356518627\|ref\|XP_003527980.1\|	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS51566 PTHR13793 PTHR13793:SF5 SM00249 SM00317 SSF57903 SSF63748 SSF82199 cd15495 cd15517 cd15663	31
Lj2g3v2171850.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi\|502095665\|ref\|XP_004490508.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR001965 IPR011011 IPR013083 IPR014001 IPR019786 IPR027417 PF00176 PF00271 PS01359 PS50089 PS51192 PS51194 PTHR10799 PTHR10799:SF695 SM00184 SM00249 SM00487 SM00490 SSF52540 SSF57850 SSF57903 cd00046 cd00162 cd15517 mobidb-lite	30
Lj2g3v2171850.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin-protein ligase SHPRH-like isoform X1 [Cicer arietinum] gi\|502095665\|ref\|XP_004490508.1\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR001965 IPR011011 IPR013083 IPR014001 IPR019786 IPR027417 PF00176 PF00271 PS01359 PS50089 PS51192 PS51194 PTHR10799 PTHR10799:SF695 SM00184 SM00249 SM00487 SM00490 SSF52540 SSF57850 SSF57903 cd00046 cd00162 cd15517	29
Lj3g3v2441840.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi\|356522510\|ref\|XP_003529889.1\|	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 PF00628 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50868 PS51566 PTHR13793 PTHR13793:SF92 SM00249 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517	30
Lj3g3v2441840.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: histone-lysine N-methyltransferase ATX3-like [Glycine max] gi\|356522510\|ref\|XP_003529889.1\|	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.160 G3DSA:3.30.40.10 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 PF00628 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50868 PS51566 PTHR13793 PTHR13793:SF92 SM00249 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517	30
LotjaGi1g1v0131200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase SHPRH; TAIR: AT2G40770.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Swiss-Prot: sp\|Q149N8\|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH; TrEMBL-Plants: tr\|I1JH54\|I1JH54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131200	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR001965 IPR011011 IPR013083 IPR014001 IPR019786 IPR027417 IPR038718 PF00176 PF00271 PS01359 PS50089 PS51192 PS51194 PTHR45865 SM00184 SM00249 SM00487 SM00490 SSF52540 SSF57850 SSF57903 cd15517 cd18070 cd18793 mobidb-lite	31
LotjaGi1g1v0131200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase SHPRH; TAIR: AT2G40770.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Swiss-Prot: sp\|Q149N8\|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH; TrEMBL-Plants: tr\|I1JH54\|I1JH54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131200	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR001965 IPR011011 IPR013083 IPR014001 IPR019786 IPR027417 IPR038718 PF00176 PF00271 PS01359 PS50089 PS51192 PS51194 PTHR45865 SM00184 SM00249 SM00487 SM00490 SSF52540 SSF57850 SSF57903 cd15517 cd18070 cd18793 mobidb-lite	31
LotjaGi1g1v0131200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase SHPRH; TAIR: AT2G40770.1 RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein; Swiss-Prot: sp\|Q149N8\|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH; TrEMBL-Plants: tr\|I1JH54\|I1JH54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0131200	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR001965 IPR011011 IPR013083 IPR014001 IPR019786 IPR027417 IPR038718 PF00176 PF00271 PS01359 PS50089 PS51192 PS51194 PTHR45865 SM00184 SM00249 SM00487 SM00490 SSF52540 SSF57850 SSF57903 cd15517 cd18070 cd18793 mobidb-lite	31
LotjaGi1g1v0284200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp\|Q8GZ42\|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr\|I1JYS9\|I1JYS9_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0284200	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR041955 IPR042011 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF134 SM00249 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517 cd15663	38
LotjaGi3g1v0394900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp\|Q9M364\|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr\|A0A151SIL1\|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900	Domains G3DSA:2.170.270.10 G3DSA:2.30.30.140 G3DSA:3.30.40.10 IPR000313 IPR001214 IPR001965 IPR003616 IPR011011 IPR013083 IPR019786 IPR019787 IPR025780 IPR034732 IPR042011 PF00628 PF00855 PF00856 PF13831 PF13832 PS01359 PS50016 PS50280 PS50812 PS50868 PS51566 PS51805 PTHR13793 PTHR13793:SF141 SM00249 SM00293 SM00317 SM00508 SSF57903 SSF63748 SSF82199 cd15495 cd15517 mobidb-lite	38

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	10.00