Domain Predictions — View

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cd17875

Source: CDD

Description

SRP54_G

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 12

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi3g1v0007800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A061G8Z1\|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi3g1v0007800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A061G8Z1\|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi3g1v0007800.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0355000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A0D2UQY3\|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi3g1v0355000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|I1KVG2\|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0355000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|I1KVG2\|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0355000.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A0D2UQY3\|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi4g1v0068100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A061G8Z1\|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi4g1v0068100	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd17875	CDD	1	8.33