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LotjaGi4g1v0068100.1

Overview

Field Value
Gene ID LotjaGi4g1v0068100
Transcript ID LotjaGi4g1v0068100.1
Lotus japonicus genome version Gifu v1.2
Description Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi4g1v0068100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8535860..8539824) extracted from Lotus japonicus Gifu genome v1.2.

CAAGAGTCAGGACAACTAGACAAGACTATCCACCAAGACTCTCTTGCCATAAATCCCATTTGCATTCCACCCCGTGCAAA TGCCTTCCCTCCCAAGAAAGAAAAAACCGAGGTTCCATTCCATCCAGTGCAAACCCTAATTTGAGAAATTCAATTCACTT GCCAATTCAGAAAGAAACATGGTTGTTCTTCAACAGTTAGGTGAAAACATTTCTCGTGCTCTTCAGCAGATGAGCAATGC CACCATGATCAATGAGAAGGTCCTCAACGAATGCCTCAACGAGATCACTCGCGCCCTTCTTCAATCCGGTGTCGAATTCG AGCTCGTCCGCGACATGCAGACCAACATCAAGAAGATTGTCAACCTCGACGATCTCACTGCAGGCCACAACAAGCGCAAG ATATTCTGCCAAGTAACCCCTTTTTTCCTCTCTTGTTTCTTCAATACCAATCTTTGATAATGGGTCGGTCTTGGATTTCA CGTTGGGTGACACAGTTTCCTGTTGTTGTTGACAATTGTCATGACTTTTTGTTATCTTCTCTGTAATCTTTTGTGGATTC TAGGCTGTGATCGATGAACTCTGTAAGCTTCTGGATTCTGGAAAGCCTTCTCATACTCCCAAAAGACGAAAAGCAAGTGT TGTCATGATTGTTGGTTTACAAGGTTCATATAATGTGCTTATGTTAATTTCACATAAAATGATTCTGGCATGTAAATCAA CCATCAAAATCATGAATTCTAAATTTATACAGTGTTTTAATAAGTGATTTCTGGCTTTCGTTGTTGGGTACTTGTTTGTC CATGTCTTTTTGAAGATAAGATGCATTTATACTTATTGATGGATACTTATATGGCTCTTTTACTCTCAAAGAAGGAAAAG CAAGTATTGTCATGATTGTTGGTTTACAAGATTTGTTGCATATTAAACAAGTTTTTATGTCATTTGTTCATATAATGGGC TTGAGTTAATTTGACACAAAATTGTTTTGCTATGTAAATCAACCATCCAAATCATGTATTCTAAATTTTATGAGAAAATT TATACATTATTCATGGATAATTGCTTATATCAGTTATATGTTTCTTGAACGAATTCAGGATCTGGAAAAACCACAACTTG TACAAAATATGGACATTATCATCAAAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCTGATACATTCAGAGCTGATGCAT TTGATCAGTTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTATTATGGAAGGTTCTCGTTAGCATTCGTTTTATAGGTT TATATTCTATGTAAAATGCAAACTCAGAATCTGTGACTGGAGGTAATTTAATTGATCTGTAGATACATGTTCTATAGCTA AACATGATACCTGCATTGCTTTTGATAATAGAGTCGAGGTTGTAGATGTTGAAGACGCACAACCACAGTTATGTTTCTAT TTGGCTTTTATGTTGGCTGGTCATATTTTTTATCTAGATTTTGAAACCATGAGATAAATGTTTTATTAGAACTTGCTGAT TCTTTTTCGGCAACCTAATCTGAACATTTTCCTAAACAAGAATGGTGTATAGTTTTTAGAGACTGAATTTGCTTCATAGT CTGAAATTTTTTGTCTTGGATTTTAGTAATAGGTCAAACTTGGCCTTCTAGTAAGTAATACCCCCAACCCCCCGCCCCTC CCCAAGTTTGTTTTGGGAGTATCTGGCCGAGTTAGGACAAGGCTGAGATCGGCCATGTCTAATCACCTTTATCAATTGCT AAATCTGAAGCCCATATGTCATACACTCTTTAATCTCAAATCGCATTGTTCAGGTTCCAATGCCTACAAAAGACTTACCC TTTTTCTTTAGCTTTCACCTGTGCACTTTTTTTACAAAAGAAAGTCTAAGGAAAAGGACCCAAGAAAAATGGAAATCAGA AGCTGCTTGAAACATTGTCGACTGGAGACAGATTACAATCTTTCTCATAGACACGCTATGTTATTTTTCCATTGGAATAT ATTGCATTACTGACAAACAAAATCAAGCAACAAATAAAGAGCTTTATTCTTTCTTTCTTCCTCCCTAGGATCTATTTGGA ATTTTGTCTTTATGTACAATTCCTGCTCTATCATTTATGCTGTCCTTACCACTCTTCTTCTATTATACAATTTGTTTTTC ATTGCCTACAATCTTAATGCTTAAGTAATTTTTGTGGTTGCTATGCCCCATTACTCTGCAGCTATATAGAATCAGATCCT GTGAAAATTGCCGTGGAAGGTGTTGAAAGATTCAAGAAAGAAAACTGTGATCTTATTATTGTTGACACCAGTGGACGGCA CAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTTAGAAGCAACGGTATTTTCTCTGGATACTGTCTGCATCA ATGTCTGTTTTCAGAAGCCAATAATCTCTGATGTCATTTCTTTGCATTGTTCAGAAACCAGATCTTGTTATATTTGTCAT GGACAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTGGGAGCTGTCATTGTCA CTAAAATGGATGGCCATGCAAAGGGTGGTGGTGCTCTTAGTGCGTAAGTCTTCGTTAATATGATTTAATACCAACCTATG TAAATATGATTTGTGTTTGTGCTTATGGTTTGAATATGTAGGCTTATTATCATTTGTTTGTGTGTCCAGTGTTGCGGCAA CTAAGAGTCCTGTCATATTCATTGGAACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTGAACCATTTGTTAGT CGTCTATTAGGTGGGTGCTTTTGGTTTTTGTCTTGGACATGAATTTTATGTTACCCCTCACTTATTCAAGTATATATGAT ATGGAAGTTCCCTTAAATACTAATCTTTAGTCATGTCAAATGACTTTTGAACTAGGCATGGAAGACTTGTCTGGTTTCAT GGACAAAATTCAGGAAGTTGTTCCTATGGATCAACGGCATGAACTGCTTCAAAAGCTGTCAAAAGGAATCTACACATTAA GGATTATGTACAAGCAGTTTCAAAACTTCCTTGAAATCGGTCCTATTGACCAGGTTGCGTCCCTATTTATGTTTCACTGA ATTAATTGCACACATAAATTTACATGGTTGTGGAACGAGGGGCTCTTTTTTTTCCCCTGTGAATAATGATTTGTTGATTT ATGTAGGTATTTTCTGCCCTGCCATGTTTTGGTTCTGAATTAATGGAAAAAGGCCGTGAGAAGGAAAACCAGGCTAAAAT TAAGCGTTACATGAGAATGATGGACTCAATGACAAACGAAGGCAAGCATTGGATATATATGTGTATATATTTTTAAAGAT GATCTTTAGCACATCGTCACCTGCTAATCTTTAATTGCTAATGTTTTTCAGAGTTGGATACATCAAACCCAAAACTCATG AATGAGTCAAGAATGATGCGAGTAGCTCAAGGTTCTGGTTGTCATGTTAGGGAAGTAGTGGAAATGTTGGCAGAGTACAA GTATCTTGCAAGGATGTGGAGAAAACAGAAAGGGCTTAAAAGTCCAAATGGTGATTTCAGTGCCTCATTGCTAAATCAAT TAGGAGGCATGCGTGGATTGCGAAGATTGATGACACCGATGGGAACAGGTAAGAACATGATGGAAATGGTTGGTGATGGA AATGGTTGGGGGTGGTGACAAGTAGACTTATAATGGCTTATGAGCTAAGGATTTTCAATTACAAAGGCTGAGAATGATAA AATAGGCATTGTGCAATTTATGCAGTTCGCATTGGTTTCGCATGTTCTGTCAACCAATTTATAGAAATCTTAAAGGCTGT TATGTAATGTAATAGTAAGTTTGTTTGGCACACTTTTTGTTCTTCTCTATATTACTACATTGGGTTCATTATTAAATTTT TCTGTGTCTGACATTTGATTCTTTTTTCGTCCCCAATTTTACCCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0068100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGTTCTTCAACAGTTAGGTGAAAACATTTCTCGTGCTCTTCAGCAGATGAGCAATGCCACCATGATCAATGAGAA GGTCCTCAACGAATGCCTCAACGAGATCACTCGCGCCCTTCTTCAATCCGGTGTCGAATTCGAGCTCGTCCGCGACATGC AGACCAACATCAAGAAGATTGTCAACCTCGACGATCTCACTGCAGGCCACAACAAGCGCAAGATATTCTGCCAAGCTGTG ATCGATGAACTCTGTAAGCTTCTGGATTCTGGAAAGCCTTCTCATACTCCCAAAAGACGAAAAGCAAGTGTTGTCATGAT TGTTGGTTTACAAGGATCTGGAAAAACCACAACTTGTACAAAATATGGACATTATCATCAAAAGAAAGGCTGGAAGCCAG CTCTAGTATGTGCTGATACATTCAGAGCTGATGCATTTGATCAGTTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTAT TATGGAAGCTATATAGAATCAGATCCTGTGAAAATTGCCGTGGAAGGTGTTGAAAGATTCAAGAAAGAAAACTGTGATCT TATTATTGTTGACACCAGTGGACGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTTAGAAGCAACGA AACCAGATCTTGTTATATTTGTCATGGACAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGT GTTGCAGTGGGAGCTGTCATTGTCACTAAAATGGATGGCCATGCAAAGGGTGGTGGTGCTCTTAGTGCTGTTGCGGCAAC TAAGAGTCCTGTCATATTCATTGGAACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTGAACCATTTGTTAGTC GTCTATTAGGCATGGAAGACTTGTCTGGTTTCATGGACAAAATTCAGGAAGTTGTTCCTATGGATCAACGGCATGAACTG CTTCAAAAGCTGTCAAAAGGAATCTACACATTAAGGATTATGTACAAGCAGTTTCAAAACTTCCTTGAAATCGGTCCTAT TGACCAGGTATTTTCTGCCCTGCCATGTTTTGGTTCTGAATTAATGGAAAAAGGCCGTGAGAAGGAAAACCAGGCTAAAA TTAAGCGTTACATGAGAATGATGGACTCAATGACAAACGAAGAGTTGGATACATCAAACCCAAAACTCATGAATGAGTCA AGAATGATGCGAGTAGCTCAAGGTTCTGGTTGTCATGTTAGGGAAGTAGTGGAAATGTTGGCAGAGTACAAGTATCTTGC AAGGATGTGGAGAAAACAGAAAGGGCTTAAAAGTCCAAATGGTGATTTCAGTGCCTCATTGCTAAATCAATTAGGAGGCA TGCGTGGATTGCGAAGATTGATGACACCGATGGGAACAGGTAAGAACATGATGGAAATGGTTGGTGATGGAAATGGTTGG GGGTGGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0068100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVVLQQLGENISRALQQMSNATMINEKVLNECLNEITRALLQSGVEFELVRDMQTNIKKIVNLDDLTAGHNKRKIFCQAV IDELCKLLDSGKPSHTPKRRKASVVMIVGLQGSGKTTTCTKYGHYHQKKGWKPALVCADTFRADAFDQLKQNATKAKIPY YGSYIESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVLEATKPDLVIFVMDSSIGQAAFDQAQAFKQS VAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVEPFVSRLLGMEDLSGFMDKIQEVVPMDQRHEL LQKLSKGIYTLRIMYKQFQNFLEIGPIDQVFSALPCFGSELMEKGREKENQAKIKRYMRMMDSMTNEELDTSNPKLMNES RMMRVAQGSGCHVREVVEMLAEYKYLARMWRKQKGLKSPNGDFSASLLNQLGGMRGLRRLMTPMGTGKNMMEMVGDGNGW GW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11564:SF29
2 479 478 2.4E-259 –
PANTHER
PTHR11564
2 479 478 2.4E-259
IPR022941
SMART
SM00963
3 88 86 3.0E-8
IPR013822
SUPERFAMILY
SSF47364
3 92 90 1.33E-18
IPR036225
TIGRFAM
TIGR01425
3 429 427 1.1E-205
IPR006325
Hamap
MF_00306
7 461 455 33.283
IPR022941
Pfam
PF02881
7 84 78 6.5E-11
IPR013822
Gene3D
G3DSA:1.20.120.140
7 307 301 9.3E-112
IPR042101
Gene3D
G3DSA:3.40.50.300
92 286 195 9.3E-112 –
SUPERFAMILY
SSF52540
99 298 200 1.07E-48
IPR027417
SMART
SM00382
101 278 178 2.0E-4
IPR003593
SMART
SM00962
102 297 196 3.4E-89
IPR000897
Pfam
PF00448
103 297 195 4.8E-76
IPR000897
CDD
cd17875
103 295 193 5.26826E-137 –
ProSitePatterns
PS00300
270 283 14 -
IPR000897
SUPERFAMILY
SSF47446
300 432 133 2.09E-30
IPR036891
Gene3D
G3DSA:1.10.260.30
314 437 124 5.1E-31
IPR036891
Pfam
PF02978
329 429 101 1.7E-23
IPR004125

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006614
Biological process SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
Subterm of
GO:0008312
Molecular function 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
Subterm of
GO:0048500
Cellular component Signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0068100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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