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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0007800 |
| Transcript ID | LotjaGi3g1v0007800.2 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A067KLN9|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:899146..903940) extracted from Lotus japonicus Gifu genome v1.2.
GGGTATTCATACATACTTCACAAAACCTTCCCTGCCATTCACGCCACCACTTCCCAGCATCCTTCCTCCTTCACCGGTCA TCTTCCTTTCATTCAACTTCCTCCGTTCATCGCCGCTCGCCTAAGGAGTTAAAGGTGAGATCTTTTCACACTTGTTCCTG TTTTCATTGTCAAAAATCAAAATAGTATTGTTTGTTCTTCATTGTTATGAGTGTACTCTTTAGTTTTCTAGCCCCTTATT TTTTTAGTATTATATTTTTGCACCCCTTGTTGAGTGCTGCTTTTACATTGTTGTTCTCTCTGTTTATTGTTTCTTCATTA AGACTGTTTTGTTCTTCCTTGAATGTTTGTTTGAAATCATGTTAGAAATTAGTGCTGCTTCTAGTCAAGTTGAACAAGAG GATTGATATAGATAAATAAGCGGGGTCTTAGTGTCATACTTTTTTGATTTTAGTCATGTTGTGATGTTGTGTCTGGTGTC TGTGCTTCATAGTTTATAGGGCTTCCCCTTTGTCTTCACCTTGTATTGTGGTTTCGGTACCCTAATCCGGTGATTGATTT GTGGAATCAGGCAAGGCAAGATGGTTCTAGCGCAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCC ACGGTGATCGACGAGAAGGTCCTCAACGAATGCCTCAAGGAGATCACTCGAGCTCTTCTTCAATCCGATGTTCAATTCAA GCTCGTCGCCGACATGCAGACCAACATCAAGAAGATTGTCAACCTTGACCATCTCGCCGCCGGTCACGACAAACGCAAGA TCATCCAACAAGTACAACAATCTTTTCTTATTTTATTGTAAATAAATAAATGGTTATGTGTATTATTGCTTATGCTTGTT TGCTTTTCATTGATTCTATTTCTAGGCTGTGTTTAATGAGCTCTGCAAAATGCTGGATCCTGGGAAGCCCTCTTTCGCTC CCAAGAAAGGAAATACAAGTGTGGTCATGTTCGTTGGTTTACAAGGTCTGTTGCCTGTTAATTAAGCTTACTTCTGATTC CTTATCGTATGTTTTTAATGATTTTATTCAACTGACACAACTAAGTGACACTCGCAGACATAATTTTGTATTCTGCACTT GTACATTGTTCTGAGCAATGTGTGGCATTTCTCAGATTTTACTTTCTCAGATTTCTCATAATTCTTTTCCATGTTTTTGA ATAATTCAAAGGTTCACAAGTATTGTGATATATGATAATTTTTTGTTAAAATAAATTCAGGTTCTGGAAAAACTACAACC TGTACAAAATATGCACATTATCATCAGAAGAAAGGATGGAAGCCAGCTCTAGTTTGTGCAGATACATTCAGAGCTGGTGC ATTTGATCAATTGAAGCAAAATGCCGCTAAAGCTAAGATCCCTTTCTACGGAAGGTAAGGTTCTCGTTGATATTTGTTAA TAGGTTAGTGTTGCAGTTGTATCATGCATGCAATTTTGAAATATGGTACTTACTCATTGAAGAGGAGTGACATAGTGGAG ATAGATGACTATGCTGTCTATTAATGTTCTTTTGGTTAGTCCATGCCCTCTGATTACAAATCGTAATTTTTAAGTTGATT CTGAAACTATGAGAGGAACAATCTTCCTTGAGATACAATCTGAAGAGTTTCTTCTAGGAGAATGGCCTGTAGTTGTTATG GGAGATTGTACTTGCTTTCCTGAAGATCATATACTGTACAATGTTATGCTGTCTCAGAATCAAGGTTGTCAAACTCGATA GTTTAGATAAACTCGTGGAGTGCCTGCAAACTCGACTCATGAACTCTTAAATCATGCAAAAATAATCATTAAAAACAATA TTAATGATGAAAAACTCAACAGCAAAGCTTTAAACATGCTTAAATAGCCAAATCATGCAATGGCAATTATATGAGCAAGT TTAAATCATGTTTTAATGACCAAAACATAAATAAAATTATATCCTATCTTGTGCACTCTTGAAATCCCACCTCCAATTTA CCTTTTTGGATTCTAATTTCTAAAAAAAGTAATAACCTTTGATATTATTTTTTCCTTCTTTCATGTTTTCTGTTGGAGGA TGTTAAAAAGAGAGAACTATCAGAGAGAGAGATATTAAGAGAGAAATCAGAAATGATAGAATTGTGTATTTTCCTTTAAC TGAATTGTAAACTAAGAAGCTCTCTTTATATAGAGCTGATGAGGTAGCTTACCCAGCAAGCTATTACCAATATACAATTT TCACTAACAGTCTGCTAACAAACTAACTTCCTCTAAAGGGCCAGATCTAATACAACTGAGCGCACATGAGTATAGTACTC ATGTTCTCGAATAGAGGAAAAAAAATAATACTTAGGGAAAAATGTAAAAGCTAGGAAAAAGGAAATTGTTGGCTCATTAT AAATATGCTGGTAATGTGGAAGATATCATACTACTAACATAAAGCAAACTTAGCCTTTTTTTCTTCTCCCAATGGATTTT TGTTCAGCCTTAGGATTTCACATTTTTCTTTTTCCTTTATTTTCTGAAAGCGGGTATCCACACTCAACCATTTTTCTTCT TGGTATAAGTCCTTGCAATTGAGTTATGGTATGTTGTGCTTAATATCATTTGTTTATGGAACCTTTAATACCCGTTGCAT TACATTGTCTTTCATTTCAATGCTTAAGTAATTGGTTCATTGCTCTGGTTCCATTCTTCTACAGCTATATGGAGTCAGAT CCTGTGAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACAAGTGGGCG GCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAATTTCGGAAGCAACGGTATTTCCTGTTTAAGCTATATGCA TTTGACATCTATTTCCAAAAACCAATGAATTCTAATATAGTAATATCTTTTCTTCGTATTGCTCAGAACCCAGATCTTGT TATATTTGTTATGGATAGCAGTATTGGCCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTCGCAGTTGGAG CTGTAATTGTTACCAAAATGGATGGCCATGCCAAGGGTGGTGGTGCTCTTAGCGCGTAAGTGTTACTTTCAGAATAATTG TTTCATGTTTACTATCAATTTTGCAGCCATAAACAAATGAAATTAGCAACAACTAATAACAAATTCTAGTCTAGCAATCA TACATGCATGGGCATTGCAATTTATTTTACCTCAATTTGAACCATCCTCGTGGTTTGAATTCTACATTAATGCCGAAATT ATATATACACCATTTGAAGGATTTCGAAAATTAGTTTTATATGCCTTTAAAATAAATGTTTGTTATATACTTTTGTGTAT ATATAATGTTTGTATATGCATATGTGGTTTGGATACATTAGTCTTATTAATCTTATACGTGCAGTGTTGCAGCAACAAAG AGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAGGTTGAAGTTTTTGATGTTAAGCCGTTCGTTAGTCGTCT ATTAGGTGCATATTTCTTCATTTCTTTTTTCTTTTCACCCAATACATTATAATTTTAAGGACATCCTATGTATGTCCAAG GTCATATTATTTAATCATATTAAACTGATTTTGAACTAGGCATGGGTGACTTGTCTGGGCTTATGGACAAAATTCATGGA GTTGTTCCTAGGGATCAACAGCCTGAACTGCTTGAGAAGCTGTCAGAAGGACACTTCACATTGAGGATGATGTATGAGCA GTTTCAGAACATACTTAAAATGGGTCCTCTAAACCAGGTTATTACCTTATTATGTTTTATTCATTTGTTTTACCCCCTTA ATATTTGATGTTAAAGAGGAGCATTGGCGCAACGGTAAAGAGTCGGTGCCATGTGACTGAGGTCACGGGTTCAATTCCAT GTGGTTGAACCCTTCCCCGGACCACATGCGTAGCTGGAGCTTTATTGCACCGGGCTGCCCTTGATATTTAATGTACCATA ATACTTATGAGTACTTACTTGACTGTTTCTATATAATCACCTAATAATGGCTTCCGTTGTGCTAATTTCTTAGTTGGTTT ATGTAGGTGTTTTCTATGCTTCCAGGATTTAGTGCTGAACTAATGCCCAAAGGCAGTGAGAAAGAAGGCCAGGCAAAAAT TAAGCGTTACATGACAATGATGGATTCAATGACAAACAAAGGCAAGCATTGTGATTTGATTGTCACAAAGATCAGCTTCA TGTATAGAAGATTCTGGTTTTCATTGAAATAGCGCATTCTGATATGCTAATCTTTAACTGCTAATGTTTCAGAGTTGGAT AGTTCAAACCCAAAGCTCATGAATGAGTCACGTATTTTGCGAATAGCTCGAGGTTCTGGTCATCAAGTTAGGGAAGTGAT GGAGATGTTGGAAGAATACAAGCGTTTGACAAAGATGATATGGAGCAAAATGAAAGGGCTCAAGACATCAAAGAAGGGTG ATATGAGTGCCCTGTCGAGAAATATGAATGCTCAGCAAATCATGAACTTGATGAAGCAGATGGGATCTACAAAAGACATG ATGGGAAGGTTTGGCGGTGGTGGTAATTAGTTTATTGGGCAGGACATATGAGCTGAGTGGAGTGGTGCTAAAATAAACCA CTACTGCTTCAGAACCAGACTCTGTGAGCAGGCTAAGCAGTTCAATAGGTGCTAGATAGGCTCTGCATAATTTTTTTTTG TAATGTTGAATTCAGTTCAATAGGTGCTTAAATAAACCACTACTGCTATATCTTTTTTTGTAATGTTGAATTCTT
CDS sequence (LotjaGi3g1v0007800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTAGCGCAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCCACGGTGATCGACGAGAAGGT CCTCAACGAATGCCTCAAGGAGATCACTCGAGCTCTTCTTCAATCCGATGTTCAATTCAAGCTCGTCGCCGACATGCAGA CCAACATCAAGAAGATTGTCAACCTTGACCATCTCGCCGCCGGTCACGACAAACGCAAGATCATCCAACAAGCTGTGTTT AATGAGCTCTGCAAAATGCTGGATCCTGGGAAGCCCTCTTTCGCTCCCAAGAAAGGAAATACAAGTGTGGTCATGTTCGT TGGTTTACAAGGTTCTGGAAAAACTACAACCTGTACAAAATATGCACATTATCATCAGAAGAAAGGATGGAAGCCAGCTC TAGTTTGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCCGCTAAAGCTAAGATCCCTTTCTAC GGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTAT AATTGTTGATACAAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAATTTCGGAAGCAACGAACC CAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGCCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTC GCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAGCAACAAA GAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAGGTTGAAGTTTTTGATGTTAAGCCGTTCGTTAGTCGTC TATTAGGCATGGGTGACTTGTCTGGGCTTATGGACAAAATTCATGGAGTTGTTCCTAGGGATCAACAGCCTGAACTGCTT GAGAAGCTGTCAGAAGGACACTTCACATTGAGGATGATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTCTAAA CCAGGTGTTTTCTATGCTTCCAGGATTTAGTGCTGAACTAATGCCCAAAGGCAGTGAGAAAGAAGGCCAGGCAAAAATTA AGCGTTACATGACAATGATGGATTCAATGACAAACAAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGT ATTTTGCGAATAGCTCGAGGTTCTGGTCATCAAGTTAGGGAAGTGATGGAGATGTTGGAAGAATACAAGCGTTTGACAAA GATGATATGGAGCAAAATGAAAGGGCTCAAGACATCAAAGAAGGGTGATATGAGTGCCCTGTCGAGAAATATGAATGCTC AGCAAATCATGAACTTGATGAAGCAGATGGGATCTACAAAAGACATGATGGGAAGGTTTGGCGGTGGTGGTAATTAG
Protein sequence (LotjaGi3g1v0007800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLAQLGGSISRALQQMSNATVIDEKVLNECLKEITRALLQSDVQFKLVADMQTNIKKIVNLDHLAAGHDKRKIIQQAVF NELCKMLDPGKPSFAPKKGNTSVVMFVGLQGSGKTTTCTKYAHYHQKKGWKPALVCADTFRAGAFDQLKQNAAKAKIPFY GSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQISEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV AVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEVEVFDVKPFVSRLLGMGDLSGLMDKIHGVVPRDQQPELL EKLSEGHFTLRMMYEQFQNILKMGPLNQVFSMLPGFSAELMPKGSEKEGQAKIKRYMTMMDSMTNKELDSSNPKLMNESR ILRIARGSGHQVREVMEMLEEYKRLTKMIWSKMKGLKTSKKGDMSALSRNMNAQQIMNLMKQMGSTKDMMGRFGGGGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 93 | 93 | 6.98E-21 | ||
| PANTHER | 1 | 477 | 477 | 4.9E-291 | – | |
| PANTHER | 1 | 477 | 477 | 4.9E-291 | ||
| SMART | 2 | 87 | 86 | 1.6E-11 | ||
| TIGRFAM | 2 | 428 | 427 | 1.1E-225 | ||
| Pfam | 6 | 83 | 78 | 1.9E-15 | ||
| Hamap | 6 | 448 | 443 | 35.351 | ||
| Gene3D | 7 | 306 | 300 | 1.4E-116 | ||
| Gene3D | 91 | 285 | 195 | 1.4E-116 | – | |
| SUPERFAMILY | 96 | 298 | 203 | 2.46E-49 | ||
| SMART | 100 | 277 | 178 | 2.8E-4 | ||
| SMART | 101 | 296 | 196 | 5.1E-94 | ||
| Pfam | 102 | 296 | 195 | 3.4E-78 | ||
| CDD | 102 | 294 | 193 | 9.04321E-139 | – | |
| ProSitePatterns | 269 | 282 | 14 | - | ||
| SUPERFAMILY | 298 | 429 | 132 | 4.84E-36 | ||
| Gene3D | 310 | 451 | 142 | 3.1E-39 | ||
| Pfam | 328 | 429 | 102 | 1.6E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Cellular component | Signal recognition particle | A complex of protein and RNA which facilitates translocation of proteins across membranes. |
Expression pattern of LotjaGi3g1v0007800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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