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LotjaGi3g1v0007800.6

Overview

Field Value
Gene ID LotjaGi3g1v0007800
Transcript ID LotjaGi3g1v0007800.6
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|A0A061G8Z1|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:899305..903360) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTTCTAGCGCAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCCACGGTGATCGACGAGAAGGT CCTCAACGAATGCCTCAAGGAGATCACTCGAGCTCTTCTTCAATCCGATGTTCAATTCAAGCTCGTCGCCGACATGCAGA CCAACATCAAGAAGATTGTCAACCTTGACCATCTCGCCGCCGGTCACGACAAACGCAAGATCATCCAACAAGTACAACAA TCTTTTCTTATTTTATTGTAAATAAATAAATGGTTATGTGTATTATTGCTTATGCTTGTTTGCTTTTCATTGATTCTATT TCTAGGCTGTGTTTAATGAGCTCTGCAAAATGCTGGATCCTGGGAAGCCCTCTTTCGCTCCCAAGAAAGGAAATACAAGT GTGGTCATGTTCGTTGGTTTACAAGGTCTGTTGCCTGTTAATTAAGCTTACTTCTGATTCCTTATCGTATGTTTTTAATG ATTTTATTCAACTGACACAACTAAGTGACACTCGCAGACATAATTTTGTATTCTGCACTTGTACATTGTTCTGAGCAATG TGTGGCATTTCTCAGATTTTACTTTCTCAGATTTCTCATAATTCTTTTCCATGTTTTTGAATAATTCAAAGGTTCACAAG TATTGTGATATATGATAATTTTTTGTTAAAATAAATTCAGGTTCTGGAAAAACTACAACCTGTACAAAATATGCACATTA TCATCAGAAGAAAGGATGGAAGCCAGCTCTAGTTTGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAA ATGCCGCTAAAGCTAAGATCCCTTTCTACGGAAGGTAAGGTTCTCGTTGATATTTGTTAATAGGTTAGTGTTGCAGTTGT ATCATGCATGCAATTTTGAAATATGGTACTTACTCATTGAAGAGGAGTGACATAGTGGAGATAGATGACTATGCTGTCTA TTAATGTTCTTTTGGTTAGTCCATGCCCTCTGATTACAAATCGTAATTTTTAAGTTGATTCTGAAACTATGAGAGGAACA ATCTTCCTTGAGATACAATCTGAAGAGTTTCTTCTAGGAGAATGGCCTGTAGTTGTTATGGGAGATTGTACTTGCTTTCC TGAAGATCATATACTGTACAATGTTATGCTGTCTCAGAATCAAGGTTGTCAAACTCGATAGTTTAGATAAACTCGTGGAG TGCCTGCAAACTCGACTCATGAACTCTTAAATCATGCAAAAATAATCATTAAAAACAATATTAATGATGAAAAACTCAAC AGCAAAGCTTTAAACATGCTTAAATAGCCAAATCATGCAATGGCAATTATATGAGCAAGTTTAAATCATGTTTTAATGAC CAAAACATAAATAAAATTATATCCTATCTTGTGCACTCTTGAAATCCCACCTCCAATTTACCTTTTTGGATTCTAATTTC TAAAAAAAGTAATAACCTTTGATATTATTTTTTCCTTCTTTCATGTTTTCTGTTGGAGGATGTTAAAAAGAGAGAACTAT CAGAGAGAGAGATATTAAGAGAGAAATCAGAAATGATAGAATTGTGTATTTTCCTTTAACTGAATTGTAAACTAAGAAGC TCTCTTTATATAGAGCTGATGAGGTAGCTTACCCAGCAAGCTATTACCAATATACAATTTTCACTAACAGTCTGCTAACA AACTAACTTCCTCTAAAGGGCCAGATCTAATACAACTGAGCGCACATGAGTATAGTACTCATGTTCTCGAATAGAGGAAA AAAAATAATACTTAGGGAAAAATGTAAAAGCTAGGAAAAAGGAAATTGTTGGCTCATTATAAATATGCTGGTAATGTGGA AGATATCATACTACTAACATAAAGCAAACTTAGCCTTTTTTTCTTCTCCCAATGGATTTTTGTTCAGCCTTAGGATTTCA CATTTTTCTTTTTCCTTTATTTTCTGAAAGCGGGTATCCACACTCAACCATTTTTCTTCTTGGTATAAGTCCTTGCAATT GAGTTATGGTATGTTGTGCTTAATATCATTTGTTTATGGAACCTTTAATACCCGTTGCATTACATTGTCTTTCATTTCAA TGCTTAAGTAATTGGTTCATTGCTCTGGTTCCATTCTTCTACAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGA AGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACAAGTGGGCGGCACAAACAAGAAGCTGCTC TTTTTGAAGAAATGCGCCAAATTTCGGAAGCAACGGTATTTCCTGTTTAAGCTATATGCATTTGACATCTATTTCCAAAA ACCAATGAATTCTAATATAGTAATATCTTTTCTTCGTATTGCTCAGAACCCAGATCTTGTTATATTTGTTATGGATAGCA GTATTGGCCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTCGCAGTTGGAGCTGTAATTGTTACCAAAATG GATGGCCATGCCAAGGGTGGTGGTGCTCTTAGCGCGTAAGTGTTACTTTCAGAATAATTGTTTCATGTTTACTATCAATT TTGCAGCCATAAACAAATGAAATTAGCAACAACTAATAACAAATTCTAGTCTAGCAATCATACATGCATGGGCATTGCAA TTTATTTTACCTCAATTTGAACCATCCTCGTGGTTTGAATTCTACATTAATGCCGAAATTATATATACACCATTTGAAGG ATTTCGAAAATTAGTTTTATATGCCTTTAAAATAAATGTTTGTTATATACTTTTGTGTATATATAATGTTTGTATATGCA TATGTGGTTTGGATACATTAGTCTTATTAATCTTATACGTGCAGTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGG AACTGGAGAACATATGGATGAGGTTGAAGTTTTTGATGTTAAGCCGTTCGTTAGTCGTCTATTAGGTGCATATTTCTTCA TTTCTTTTTTCTTTTCACCCAATACATTATAATTTTAAGGACATCCTATGTATGTCCAAGGTCATATTATTTAATCATAT TAAACTGATTTTGAACTAGGCATGGGTGACTTGTCTGGGCTTATGGACAAAATTCATGGAGTTGTTCCTAGGGATCAACA GCCTGAACTGCTTGAGAAGCTGTCAGAAGGACACTTCACATTGAGGATGATGTATGAGCAGTTTCAGAACATACTTAAAA TGGGTCCTCTAAACCAGGTTATTACCTTATTATGTTTTATTCATTTGTTTTACCCCCTTAATATTTGATGTTAAAGAGGA GCATTGGCGCAACGGTAAAGAGTCGGTGCCATGTGACTGAGGTCACGGGTTCAATTCCATGTGGTTGAACCCTTCCCCGG ACCACATGCGTAGCTGGAGCTTTATTGCACCGGGCTGCCCTTGATATTTAATGTACCATAATACTTATGAGTACTTACTT GACTGTTTCTATATAATCACCTAATAATGGCTTCCGTTGTGCTAATTTCTTAGTTGGTTTATGTAGGTGTTTTCTATGCT TCCAGGATTTAGTGCTGAACTAATGCCCAAAGGCAGTGAGAAAGAAGGCCAGGCAAAAATTAAGCGTTACATGACAATGA TGGATTCAATGACAAACAAAGGCAAGCATTGTGATTTGATTGTCACAAAGATCAGCTTCATGTATAGAAGATTCTGGTTT TCATTGAAATAGCGCATTCTGATATGCTAATCTTTAACTGCTAATGTTTCAGAGTTGGATAGTTCAAACCCAAAGCTCAT GAATGAGTCACGTATTTTGCGAATAGCTCGAGGTTCTGGTCATCAAGTTAGGGAAGTGATGGAGATGTTGGAAGAATACA AGCGTTTGACAAAGATGATATGGAGCAAAATGAAAGGGCTCAAGACATCAAAGAAGGGTGATATGAGTGCCCTGTCGAGA AATATGAATGCTCAGCAAATCATGAACTTGATGAAGCAGATGGGATCTACAAAAGACATGATGGGAAGGTTTGGCGGTGG TGGTAATTAGTTTATTGGGCAGGACATATGAGCTGAGTGGAGTGGTGCTAAAATAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0007800.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTCTAGCGCAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCCACGGTGATCGACGAGAAGGT CCTCAACGAATGCCTCAAGGAGATCACTCGAGCTCTTCTTCAATCCGATGTTCAATTCAAGCTCGTCGCCGACATGCAGA CCAACATCAAGAAGATTGTCAACCTTGACCATCTCGCCGCCGGTCACGACAAACGCAAGATCATCCAACAAGCTGTGTTT AATGAGCTCTGCAAAATGCTGGATCCTGGGAAGCCCTCTTTCGCTCCCAAGAAAGGAAATACAAGTGTGGTCATGTTCGT TGGTTTACAAGGTTCTGGAAAAACTACAACCTGTACAAAATATGCACATTATCATCAGAAGAAAGGATGGAAGCCAGCTC TAGTTTGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCCGCTAAAGCTAAGATCCCTTTCTAC GGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTAT AATTGTTGATACAAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAATTTCGGAAGCAACGAACC CAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGCCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTC GCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCCAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAGCAACAAA GAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAGGTTGAAGTTTTTGATGTTAAGCCGTTCGTTAGTCGTC TATTAGGCATGGGTGACTTGTCTGGGCTTATGGACAAAATTCATGGAGTTGTTCCTAGGGATCAACAGCCTGAACTGCTT GAGAAGCTGTCAGAAGGACACTTCACATTGAGGATGATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTCTAAA CCAGGTGTTTTCTATGCTTCCAGGATTTAGTGCTGAACTAATGCCCAAAGGCAGTGAGAAAGAAGGCCAGGCAAAAATTA AGCGTTACATGACAATGATGGATTCAATGACAAACAAAGGCAAGCATTGTGATTTGATTGTCACAAAGATCAGCTTCATG TATAGAAGATTCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0007800.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLAQLGGSISRALQQMSNATVIDEKVLNECLKEITRALLQSDVQFKLVADMQTNIKKIVNLDHLAAGHDKRKIIQQAVF NELCKMLDPGKPSFAPKKGNTSVVMFVGLQGSGKTTTCTKYAHYHQKKGWKPALVCADTFRAGAFDQLKQNAAKAKIPFY GSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQISEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV AVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEVEVFDVKPFVSRLLGMGDLSGLMDKIHGVVPRDQQPELL EKLSEGHFTLRMMYEQFQNILKMGPLNQVFSMLPGFSAELMPKGSEKEGQAKIKRYMTMMDSMTNKGKHCDLIVTKISFM YRRF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11564:SF29
1 386 386 9.0E-250 –
SUPERFAMILY
SSF47364
1 93 93 5.23E-21
IPR036225
PANTHER
PTHR11564
1 386 386 9.0E-250
IPR022941
SMART
SM00963
2 87 86 1.6E-11
IPR013822
TIGRFAM
TIGR01425
2 391 390 1.3E-208
IPR006325
Pfam
PF02881
6 83 78 1.4E-15
IPR013822
Gene3D
G3DSA:1.20.120.140
7 306 300 8.1E-117
IPR042101
Gene3D
G3DSA:3.40.50.300
91 285 195 8.1E-117 –
SUPERFAMILY
SSF52540
96 298 203 1.7E-49
IPR027417
SMART
SM00382
100 277 178 2.8E-4
IPR003593
SMART
SM00962
101 296 196 5.1E-94
IPR000897
CDD
cd17875
102 294 193 8.18576E-139 –
Pfam
PF00448
102 296 195 2.3E-78
IPR000897
ProSitePatterns
PS00300
269 282 14 -
IPR000897
SUPERFAMILY
SSF47446
298 390 93 4.01E-22
IPR036891
Gene3D
G3DSA:1.10.260.30
312 402 91 6.0E-22
IPR036891
Pfam
PF02978
328 391 64 1.8E-14
IPR004125

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006614
Biological process SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
Subterm of
GO:0008312
Molecular function 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
Subterm of
GO:0048500
Cellular component Signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0007800.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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