Domain Predictions — View

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TIGR01425

Source: TIGRFAM

Description

SRP54_euk: signal recognition particle protein SRP54

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003924 View details of GO:0003924 AmiGO InterPro QuickGO	Molecular function	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.	Subterm of GO:0017111
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of GO:0032550 GO:0032561 GO:0035639
GO:0006614 View details of GO:0006614 AmiGO InterPro QuickGO	Biological process	SRP-dependent cotranslational protein targeting to membrane	The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.	Subterm of GO:0006613 GO:0045047
GO:0008312 View details of GO:0008312 AmiGO InterPro QuickGO	Molecular function	7S RNA binding	Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).	Subterm of GO:0003723
GO:0048500 View details of GO:0048500 AmiGO InterPro QuickGO	Cellular component	Signal recognition particle	A complex of protein and RNA which facilitates translocation of proteins across membranes.	Subterm of GO:0044444 GO:1990904

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v0044270.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi\|508778637\|gb\|EOY25893.1\|	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF5 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425	24
Lj4g3v0510210.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi\|508778637\|gb\|EOY25893.1\|	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF5 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425	24
LotjaGi3g1v0007800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A061G8Z1\|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi3g1v0007800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0007800.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A061G8Z1\|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi3g1v0007800.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A067KLN9\|A0A067KLN9_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007800	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0355000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A0D2UQY3\|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi3g1v0355000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|I1KVG2\|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0355000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|I1KVG2\|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28
LotjaGi3g1v0355000.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A0D2UQY3\|A0A0D2UQY3_GOSRA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	27
LotjaGi4g1v0068100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp\|P49972\|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr\|A0A061G8Z1\|A0A061G8Z1_THECC Signal recognition particle, SRP54 subunit protein; Found in the gene: LotjaGi4g1v0068100	Domains G3DSA:1.10.260.30 G3DSA:1.20.120.140 G3DSA:3.40.50.300 IPR000897 IPR003593 IPR004125 IPR006325 IPR013822 IPR022941 IPR027417 IPR036225 IPR036891 IPR042101 MF_00306 PF00448 PF02881 PF02978 PS00300 PTHR11564 PTHR11564:SF29 SM00382 SM00962 SM00963 SSF47364 SSF47446 SSF52540 TIGR01425 cd17875	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd17875	CDD	1	7.14