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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0355000 |
| Transcript ID | LotjaGi3g1v0355000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle 54 kDa protein; TAIR: AT1G48900.1 Signal recognition particle, SRP54 subunit protein; Swiss-Prot: sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2; TrEMBL-Plants: tr|I1KVG2|I1KVG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73671396..73676344) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGTATTATTTAACAATAAATACTCAAAATTGAGACTGAGCACCCAACACAGAAAACCAAAATCCCAAATCCACATA CGAAGCGTGTTCGAACGAGCGATTCTTCAACCTGCAAACCCTAATTCGACAAATTCGATCGCCGGAAAAGGTAATCGGAG AAGATGGTTCTTCAACAGTTAGGCGGGAGCATTTCCCGTGCTCTTCAGCAGATGAGCAATGCCACAATCATCGATGAGAA GGTTCTCAACGAATGCCTCAACGAGATCACTCGCGCTCTTCTTCAATCCGATGTGCAATTCAAGCTCGTCCGCGATATGC AGACCAATATCAAGAAGATTGTCAATCTGGAGGATCTCGCTGCGGGACACAACAAGCGCAGGATCATCCAGCAAGTAAAC CCCCTGTCCGCTTTCTGTTTCCCTAATTCTAGTTTTTGATAATGTGTCTTAGAATTGATGTGGGGTGTTGTGTTGTGTTT GTATGCGTTAGAGGGTTATTGGGTTCGAATCAAAATTTTGCCTTGTTTAGATGGAAATGGTATCATCGATCCATGCTCTG TGGTGGGTTGAATTGTTGATTTAATCGAAAGTTAGAGTTATAATTATACTAGTGTCCCATTTACCTCAATTTTGCTCATG AATGCTAAAAAGCTTGCTTTACTGAAGAGAATTCAATTCAACCTTAGAATTTGGAATAATGGCATTCTAGGTCTAAATGT TCTTAGAAGTTTTTTAGTGTCTAATTAGGTTTAATGCGCAACTGGGCCGAGGTCATTTGTTTCTGACAGCCAAGGTTGTC AAACTCTCGACTTGACTCTTAGAATCTTACGATTCTACGTTTCTAGGTCCCAGAACGAGTCAACTCTTAAGTAAACTCTA AAATTCCAAGAATCGAGCAAACTCTTGCTGACTCGGTAAACTCGCATAGACTCGCGATTCTACACCGAGTCTACGAGTCA CGGAGAAAACAAGTTTTTCCCTAAATCCCCAAATTAAATGGGGTAATTTTGGGTTTTAACGAAAAACTTTCAACTAAGAT TGAGAAAAAGTTAGGGTTTCTCATTTCTATCCAACATTATCATTCACCTTCGAAGAGTTTATTATGAATTATGCATTCTT GGTACTTTGATTGTTTATGTATTTTATTGAACTTTGCTTTGTTATGAAGTTGAATGTTGAATTTATTTGGTTAATGTCTC CTTGGTGGTTTTGGTATGTATTCTTTATACACTATGATAGGTTTTATTAAGGTTTTTATTTTGGTATACGAGTTAACTCG ACAAAACGAGTTTACCTCCCCAAAACGAGTCTGCGTAAACTCTCGAGTCTGACAGCTGTTGTGATTTTTGATTATCTTCT CTGTAATGTTTTATGGACTCCTTTGATTCTAGGCTGTGTTCAATGAACTCTGCAAAATCCTGGATCCTGGAAAGCCGGCT TTTACTCTCAAAAAAGGAAAACCAAGTGTTGTCATGTTTGTTGGTTTACAAGGTTCGTTGCCTATTAAATATGTTTTCTT TCGTTTGTTCATATAATGCATTTACGTTCAATTTGACACAATTTTATGCACAATTTATTTACTGTTCTACGCGATTTGCG GCTTTTGTTAACTTTTACTGGCTGTCCATGTCTTTTCAAAGATAAAGTGCATTTATACTTATTAATGGATGCTTATATAT TTTTTAATGAATTCAGGATCTGGAAAAACCACAACTTGTACGAAATATGCATATTATCATCAAAAGAAAGGCTGGAAGCC AGCTCTAGTATGTGCAGATACATTTAGAGCTGGTGCATTTGATCAGTTGAAGCAAAATGCCACCAAAGCTAAGATCCCTT TCTATGGAAGGTACTGTTTGACATTTGTTTAGGCTAATATTCTATGTAAACTCAGAATCTGTGTCCAGTACTTTTACCTA ATTCATGACTCATTAGAAGTGTAATGATGGAGGTAATTGAATTAAACTGTAGATTTATGTTCTATAGCTAGACATGTTAC ATGCATAGCTTTTGAGAATAAAGTCGCGGTTGTAGATGTTGAAGAAGCACAATCACAGTTATATTTCTATTTGGCTTGTA TCTTGGCTGGTCATATTTTTTATGTAGATTTTGAAACCAAGCGATAATTAATGCACTAGTAGAACTGGCCGATTCTTTTT GGGGACTCAATCTGAACATTTGCTTAAAGAAGAAAGGTGTCTACTTTTTAGATATTGGATTTGCTTCATAGTCTGAAGTT TATTGTCTTAGATTTTAGTAACTCCATTTTTAGGTAAAACTTGGGGCCTTCTAGTAAGTAATACCCCCTGCCCCTCCCCA AGTTTTTTCGGGAGTATCTGGCTTCAAGTAAGCATGGAGTTAGGGCAAGGGGGAGATTGGCTATGTTTAATCACCTTTAT CAATTGCTGAATCTGAGGCCCATATCTCATACACTCTTTTATCTCACTATCACATTCCATTGTTCAGGTTCCAATGTCCA CAAAGGGCTTACCCTTTTTCTTAAGTTTTCATTTATGTTCTTTTTTACAAGAGAGTGATCAGAAGTCTAAGGAAAAGGAC ATAAGAAAAATGGAAATCGGAAGCCACTCGAAACATTGTCGACTGGAGACTTACAATCTTTCTCATAGACACGCTATGTT ATTTTTCCATTGGAAGATATTGCATTGTCGAAAAACAAAATAAACCAATAATTAAAGACCTTTATTCTTTCTTTCTTCCT CCCTAGGATCGATTTGGAATTTATGCTTTATGTTACAATTTAATTTTTTAATTCATTTATTGTTTGTTTTATGGGTTGGA GGCATCCCTACTCTATCATTTATGTTGTCCATACCAGTGAACTACTCCTCTTCTATTATACAAATTGTTTTTCATTGCCT ACAACCTTAATGCTTAAGTAATATTTTTGGTTGCTTTGCCCCATTACTTTGCAGCTATATGGAATCAGATCCTGTGAAAA TTGCTGAGGAAGGTGTTGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGACACCAGTGGGAGGCACAAACAA GAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGGTATTTTCTCTGGATACTGTATGCATCAATGCCTG TTTTCAAAAGCCAAATCTCTGATGTCATTTTTTTGCCTTGTTCAGAAACCAGATCTTGTTATATTTGTTATGGACAGCAG TATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTGGGAGCTGTCATCATCACTAAAATGG ATGGCCATGCAAAGGGTGGTGGTGCTCTTAGCGCGTAAGTTTGAGTTGATATGATTTAATATCAACTTGTGAAAATATGA TGTGTGTGTGTTATGATTTGAATATGTAGGCTTATTATTATTTGAGAATCTATTCTTAACTATATTGTGTGTTCAGTGTT GCAGCAACTAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAACCGTT TGTTAGTCGTCTATTAGGTTTGTACTTTTCGTTTTTGTCTTCGACTTGAATTTTATGTTATGCCTCACTTTTTCAAGTAT ATATGATATTGAAGTTCCCTCAAATACTAATCTTTAGTCATGTCAAATGACTTTTGAACTAGGCATGGGAGATTTGTCTG GGTTCATGGACAAAATTCAGGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTTCAAAAGCTGTCAGAAGGAAACTTT ACCTTAAGGATTATGTATGAGCAGTTTCAAAACATACTTAAAATGGGTCCTATCGGTCAGGTTGTGCCCCTATTTATGTT CAATTGAATTGATTGTACTCATTAATTTGCATTTGATGCACTTAACAGGCAGTAATATTTGCATGGTCGTGTAACGATGG GCTCTTTTTTTTTCCCCTGATTAATTTTTTGTTGATTTATATAGGTATTTTCTATGCTACCAGGATTTAGTTCTGAATTA ATGCCAAAAGGCCGTGAGAAGGAAAGTCAAGCCAAAATTAAGCGTTACATGACAATGATGGACTCAATGACAAACGAAGG CAAGCATTAGATTTTTCTTTTTTTAATTTGATCTTTATGTACTCTAAATTCATTGTTCTCATTGTAATAGCACACCTTCA CATGCTCAACTAATTGCTAATATTTTCAGAGTTGGATAGCTCAAACCCAAAAATGATGAATGAGTCAAGAATGATGCGAG TAGCTCGAGGTTCTGGTCGTCAGGTTAGGGAAGTAATGGAAATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGC AAAATGAAAGGACTTAAAATACCAAAGAAGGGCGATATGAGTGCCTTATCCCGAAATATGAATGCCCAGCACATGAGCAA AGTCCTTCCTCCACAAATGCTAAAGCAAATAGGAGGCATGGGTGGATTGCAAAGCTTGATGAAACAGATGGGATCTGGTA AGGACATGATGGGAGGCATGGGTGGAATGTTTGGCGGTGGTGGTGATAAGTAGACTTATTTTAGCATATGAGCTGATGGT TGTTTTCTGCCACTGCTATATATACTCTGGTTTTCCATGAGCTAGCTTTGGCATTGCACAAACTATTCAGTTCGCATTGA TTCGGATGTGCTGTCAACCAATTTATGAAATCTCAAGAGCTGTAATGGAATAGTTCATTTCAATTTTAACTTGGCAGTCT TTTTTTCTGTAAAACTAAAATCCTTTTTCCCCCTTTGCCTGTATATTTACTAGTCTTCGGATTTTAGTCAAAGTGCTAAA TCAGAATTTTTCTTATCAGTGTAACGTTAAAGATAATAAAATTCTATATGGCTCCTCTCCCCATTATATTGAAAAATGAG GACTGAGGAGGTTCATTCTGATAGTAGGTTCTCTCAATATTATATCCGTGTGACCGTGTGTATCTTCAA
CDS sequence (LotjaGi3g1v0355000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTTCAACAGTTAGGCGGGAGCATTTCCCGTGCTCTTCAGCAGATGAGCAATGCCACAATCATCGATGAGAAGGT TCTCAACGAATGCCTCAACGAGATCACTCGCGCTCTTCTTCAATCCGATGTGCAATTCAAGCTCGTCCGCGATATGCAGA CCAATATCAAGAAGATTGTCAATCTGGAGGATCTCGCTGCGGGACACAACAAGCGCAGGATCATCCAGCAAGCTGTGTTC AATGAACTCTGCAAAATCCTGGATCCTGGAAAGCCGGCTTTTACTCTCAAAAAAGGAAAACCAAGTGTTGTCATGTTTGT TGGTTTACAAGGATCTGGAAAAACCACAACTTGTACGAAATATGCATATTATCATCAAAAGAAAGGCTGGAAGCCAGCTC TAGTATGTGCAGATACATTTAGAGCTGGTGCATTTGATCAGTTGAAGCAAAATGCCACCAAAGCTAAGATCCCTTTCTAT GGAAGCTATATGGAATCAGATCCTGTGAAAATTGCTGAGGAAGGTGTTGAAAGATTCAAGAAAGAAAACTGTGATCTTAT AATTGTTGACACCAGTGGGAGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAAC CAGATCTTGTTATATTTGTTATGGACAGCAGTATCGGTCAGGCTGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTT GCAGTGGGAGCTGTCATCATCACTAAAATGGATGGCCATGCAAAGGGTGGTGGTGCTCTTAGCGCTGTTGCAGCAACTAA GAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAACCGTTTGTTAGTCGTC TATTAGGCATGGGAGATTTGTCTGGGTTCATGGACAAAATTCAGGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTT CAAAAGCTGTCAGAAGGAAACTTTACCTTAAGGATTATGTATGAGCAGTTTCAAAACATACTTAAAATGGGTCCTATCGG TCAGGTATTTTCTATGCTACCAGGATTTAGTTCTGAATTAATGCCAAAAGGCCGTGAGAAGGAAAGTCAAGCCAAAATTA AGCGTTACATGACAATGATGGACTCAATGACAAACGAAGAGTTGGATAGCTCAAACCCAAAAATGATGAATGAGTCAAGA ATGATGCGAGTAGCTCGAGGTTCTGGTCGTCAGGTTAGGGAAGTAATGGAAATGATGGAAGAGTACAAACGTCTTGCAAA GATATGGAGCAAAATGAAAGGACTTAAAATACCAAAGAAGGGCGATATGAGTGCCTTATCCCGAAATATGAATGCCCAGC ACATGAGCAAAGTCCTTCCTCCACAAATGCTAAAGCAAATAGGAGGCATGGGTGGATTGCAAAGCTTGATGAAACAGATG GGATCTGGTAAGGACATGATGGGAGGCATGGGTGGAATGTTTGGCGGTGGTGGTGATAAGTAG
Protein sequence (LotjaGi3g1v0355000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLQQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLEDLAAGHNKRRIIQQAVF NELCKILDPGKPAFTLKKGKPSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY GSYMESDPVKIAEEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV AVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIQEVVPMDQQPELL QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKMMNESR MMRVARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQM GSGKDMMGGMGGMFGGGGDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 498 | 498 | 0.0 | – | |
| SUPERFAMILY | 1 | 92 | 92 | 1.74E-21 | ||
| PANTHER | 1 | 498 | 498 | 0.0 | ||
| SMART | 2 | 87 | 86 | 4.0E-14 | ||
| TIGRFAM | 2 | 427 | 426 | 2.5E-227 | ||
| Hamap | 6 | 494 | 489 | 35.849 | ||
| Pfam | 6 | 83 | 78 | 2.7E-15 | ||
| Gene3D | 7 | 306 | 300 | 3.4E-118 | ||
| Gene3D | 91 | 285 | 195 | 3.4E-118 | – | |
| SUPERFAMILY | 95 | 298 | 204 | 6.7E-50 | ||
| SMART | 100 | 277 | 178 | 1.8E-6 | ||
| SMART | 101 | 296 | 196 | 8.8E-97 | ||
| Pfam | 101 | 296 | 196 | 1.4E-78 | ||
| CDD | 102 | 294 | 193 | 2.09551E-141 | – | |
| ProSitePatterns | 269 | 282 | 14 | - | ||
| SUPERFAMILY | 298 | 433 | 136 | 6.67E-36 | ||
| Gene3D | 310 | 450 | 141 | 3.0E-38 | ||
| Pfam | 327 | 427 | 101 | 1.3E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Cellular component | Signal recognition particle | A complex of protein and RNA which facilitates translocation of proteins across membranes. |
Expression pattern of LotjaGi3g1v0355000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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