Gene Ontology — View

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GO:0071025

Overview

Field	Value
Namespace	Biological process
Short description	RNA surveillance
Full defintion	The set of processes involved in identifying and degrading defective or aberrant RNAs.
Subterm of	GO:0006401

Relationships

The relationship of GO:0071025 with other GO terms.

Relationship type	GO terms
Is a	GO:0006401
Regulates	n.a.
Part of	n.a.
Positively regulates	n.a.
Negatively regulates	n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0071025, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field	Value
GOC	krc
PMID	Nuclear quality control of RNA polymerase II ribonucleoproteins in yeast: tilting the balance to shape the transcriptome.Villa T, Rougemaille M, Libri D Biochim Biophys Acta. 2008 Sep; 1779 (9): 524–31.PMID: 18644474 From the very first time they set foot in the nuclear landscape till the end of their life, RNAs are packaged in ribonucleoproteins (RNPs) and face numerous processing steps to achieve function. To avoid the catastrophic consequences of naturally occurring processing errors, cells employ numerous quality control strategies. Focusing on yeast as a model system, we will review here how nuclear mechanisms ensure the proper assembly and maturation of mRNPs for their release in the cytoplasm, and highlight how these mechanisms are exploited to shape the RNA polymerase II transcriptome.

Field

Value

GOC

krc

PMID

Nuclear quality control of RNA polymerase II ribonucleoproteins in yeast: tilting the balance to shape the transcriptome.Villa T, Rougemaille M, Libri D
Biochim Biophys Acta. 2008 Sep; 1779 (9): 524–31.PMID: 18644474

From the very first time they set foot in the nuclear landscape till the end of their life, RNAs are packaged in ribonucleoproteins (RNPs) and face numerous processing steps to achieve function. To avoid the catastrophic consequences of naturally occurring processing errors, cells employ numerous quality control strategies. Focusing on yeast as a model system, we will review here how nuclear mechanisms ensure the proper assembly and maturation of mRNPs for their release in the cytoplasm, and highlight how these mechanisms are exploited to shape the RNA polymerase II transcriptome.

Associated Lotus transcripts 6

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Transcript	Name	Description	GO terms	GO count
Lj1g3v4691650.1 View transcript LORE1 insertions in MG20 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pelota-like protein [Medicago truncatula] gi\|357510895\|ref\|XP_003625736.1\|	GO terms View details of GO:0070481 View details of GO:0070966 View details of GO:0071025	3
Lj5g3v1301220.1 View transcript LORE1 insertions in MG20 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein pelota-like [Glycine max] gi\|356535240\|ref\|XP_003536156.1\|	GO terms View details of GO:0070481 View details of GO:0070966 View details of GO:0071025	3
LotjaGi1g1v0683200.1 View transcript LORE1 insertions in MG20 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|G7L4Y7\|G7L4Y7_MEDTR Eukaryotic release factor 1 (ERF1) family protein; Found in the gene: LotjaGi1g1v0683200	GO terms View details of GO:0070481 View details of GO:0070966 View details of GO:0071025	3
LotjaGi5g1v0204100.1 View transcript LORE1 insertions in MG20 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|V7BDS6\|V7BDS6_PHAVU Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100	GO terms View details of GO:0070481 View details of GO:0070966 View details of GO:0071025	3
LotjaGi5g1v0204100.2 View transcript LORE1 insertions in MG20 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|A0A151U5G2\|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100	GO terms View details of GO:0070481 View details of GO:0070966 View details of GO:0071025	3
LotjaGi5g1v0204100.3 View transcript LORE1 insertions in MG20 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp\|Q9ZT87\|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr\|A0A151U5G2\|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100	GO terms View details of GO:0070481 View details of GO:0070966 View details of GO:0071025	3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term	Namespace	Name	Observations	Saturation (%)
GO:0071025 View details of GO:0071025 AmiGO InterPro QuickGO	Biological process	RNA surveillance	1	16.67