Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v4691650.1

Overview

Field Value
Gene ID Lj1g3v4691650
Transcript ID Lj1g3v4691650.1
Lotus japonicus genome version MG20 v3.0
Description Pelota-like protein [Medicago truncatula] gi|357510895|ref|XP_003625736.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF159065
1 128 128 4.58E-38 –
SMART
SM01194
1 130 130 2.30E-43
IPR005140
Pfam
PF03463
1 128 128 3.00E-43
IPR005140
PANTHER
PTHR10853
2 382 381 5.80E-135
IPR004405
TIGRFAM
TIGR00111
5 374 370 6.20E-55
IPR004405
SUPERFAMILY
SSF53137
139 274 136 5.43E-15 –
Pfam
PF03465
278 374 97 4.90E-17
IPR005142
SUPERFAMILY
SSF55315
278 379 102 5.65E-25
IPR029064
Gene3D
G3DSA:3.30.1330.30
280 378 99 3.00E-10
IPR029064

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0070481
Biological process Nuclear-transcribed mRNA catabolic process, non-stop decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon.
Subterm of
GO:0070966
Biological process Nuclear-transcribed mRNA catabolic process, no-go decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation.
Subterm of
GO:0071025
Biological process RNA surveillance The set of processes involved in identifying and degrading defective or aberrant RNAs.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v4691650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4691650.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.