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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0683200 |
| Transcript ID | LotjaGi1g1v0683200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|G7L4Y7|G7L4Y7_MEDTR Eukaryotic release factor 1 (ERF1) family protein; Found in the gene: LotjaGi1g1v0683200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125042990..125044483) extracted from Lotus japonicus Gifu genome v1.2.
CCCAATACATTTCCTATAGGTAAAAACATTAGACTGAATGCTGCCACAAAATTTTCAACATCAATCCTCAATCTTGGGCG TAAATTGCAAAAAACCTAAACCTTCAAAGAACACCTCACCGGTCATTAACTATCATGAAGCTCCTTGAGAAGGATATTAC CCTAAACCAGTCGGGTAGTGTGAAGGTGATTGCGGAAGACCCCGATGACTTATGGCTCCTCTACAACCTCATTTCCAGTG GTGACACCGTCACCGCCGACACCACACGCAAGGTCCACCTCCAGTCATCCACCAAGAGCACAGCCGCATCACGCGTCAAG CTCACACTCCACCTCAAGGTAACGCGCCGCGACTTCCACAAAGACTCCTCCACCCTCCGCATCCACGGCCGCAACCTCGA GCCCAACCAATATGTTTCTGCAGGATCCTTCCACACGTTCACCCTCGAAACAAATAACCCCTTTGAGCTTCACAAGAAGC TATGGAACCCCCAAGCCATCGAAATCTTAAACGAAAGCACTAAAAATCTCACATGTTCTTCTGATTCTTCCAATGCTGAC ATTGTTGTTGTTCCTCTTCAACAAAACCAAGCTGAGATATACTTGCTTACAAAAGGGATTACCACACGTTGTTCCAAGGT TGAAGCTTCACCATCTTCTTCACATTCACAAGCACTGAGAAAAGCTTCCTTTAACGTGTTCTTCCGTGAAGTTTTTGTCG ATTTTGTGAAGTGCGTGGATTTTAATGTGGTTAGGAGTGTGGTGATAGCGAGCGATAATGCGTCAAGGAAGAGAAAGGGA GAGTTTCATAAGTTTTTGTTGTCAGAAGCTAGGAGGTTGAGGATGAGGTGGATAGAGGAGAACAAGACATGTGTCGTGGT TGTGGGGCCCGGGTGTGGTGATTTGAGGGACGTTTTGGGTGACGTGGCGGTGATGAATGTGATAAGGGAGAGCAAGGTAG GGTTGGAGATTAGGGTTTGTAAGGAGTTGTGGGATATGGTGTGTAACGGCTCAGATCGCGTGTGTTATGGTCCAAGGGTT GTGGAGAGTGCGCAGGAGATGAGGGCTATTGAGACCCTTTTGATAAGTGATGAACTTTATAGGAGTGAAGAGACTGGGGT GAGGTTAAAGTATGAGGGTTTGGTGAGAGCAGTGAAGGACGGTGGAGGAAAGGCTTTGGTGTATTCCTCCATGCATGTCT CAGCACCGCATCTTGCTCAGCTCACGGGTGTTGCTGCTATTCTAAGGTTTCCTTTACCTGATCTTGAAGACATGGAGGAT GTTGTTTAATTTAGAATTGTAATTGCTTTACTTATTGTATATTAGTTTTAAAGTATTGGTGTATTTGAAGCTGTAATTGT GGTTGCTTTACAATCCTTAAAATTATAAAAAAAATGAATAAATTAGGATTGTATATAGTCATACTTATAGTTATGATCGA TGCAAATATGGATAGAGGTGTTCATCGGTTAGGATTTGACCTGACGAACTCGAT
CDS sequence (LotjaGi1g1v0683200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTTGAGAAGGATATTACCCTAAACCAGTCGGGTAGTGTGAAGGTGATTGCGGAAGACCCCGATGACTTATG GCTCCTCTACAACCTCATTTCCAGTGGTGACACCGTCACCGCCGACACCACACGCAAGGTCCACCTCCAGTCATCCACCA AGAGCACAGCCGCATCACGCGTCAAGCTCACACTCCACCTCAAGGTAACGCGCCGCGACTTCCACAAAGACTCCTCCACC CTCCGCATCCACGGCCGCAACCTCGAGCCCAACCAATATGTTTCTGCAGGATCCTTCCACACGTTCACCCTCGAAACAAA TAACCCCTTTGAGCTTCACAAGAAGCTATGGAACCCCCAAGCCATCGAAATCTTAAACGAAAGCACTAAAAATCTCACAT GTTCTTCTGATTCTTCCAATGCTGACATTGTTGTTGTTCCTCTTCAACAAAACCAAGCTGAGATATACTTGCTTACAAAA GGGATTACCACACGTTGTTCCAAGGTTGAAGCTTCACCATCTTCTTCACATTCACAAGCACTGAGAAAAGCTTCCTTTAA CGTGTTCTTCCGTGAAGTTTTTGTCGATTTTGTGAAGTGCGTGGATTTTAATGTGGTTAGGAGTGTGGTGATAGCGAGCG ATAATGCGTCAAGGAAGAGAAAGGGAGAGTTTCATAAGTTTTTGTTGTCAGAAGCTAGGAGGTTGAGGATGAGGTGGATA GAGGAGAACAAGACATGTGTCGTGGTTGTGGGGCCCGGGTGTGGTGATTTGAGGGACGTTTTGGGTGACGTGGCGGTGAT GAATGTGATAAGGGAGAGCAAGGTAGGGTTGGAGATTAGGGTTTGTAAGGAGTTGTGGGATATGGTGTGTAACGGCTCAG ATCGCGTGTGTTATGGTCCAAGGGTTGTGGAGAGTGCGCAGGAGATGAGGGCTATTGAGACCCTTTTGATAAGTGATGAA CTTTATAGGAGTGAAGAGACTGGGGTGAGGTTAAAGTATGAGGGTTTGGTGAGAGCAGTGAAGGACGGTGGAGGAAAGGC TTTGGTGTATTCCTCCATGCATGTCTCAGCACCGCATCTTGCTCAGCTCACGGGTGTTGCTGCTATTCTAAGGTTTCCTT TACCTGATCTTGAAGACATGGAGGATGTTGTTTAA
Protein sequence (LotjaGi1g1v0683200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLEKDITLNQSGSVKVIAEDPDDLWLLYNLISSGDTVTADTTRKVHLQSSTKSTAASRVKLTLHLKVTRRDFHKDSST LRIHGRNLEPNQYVSAGSFHTFTLETNNPFELHKKLWNPQAIEILNESTKNLTCSSDSSNADIVVVPLQQNQAEIYLLTK GITTRCSKVEASPSSSHSQALRKASFNVFFREVFVDFVKCVDFNVVRSVVIASDNASRKRKGEFHKFLLSEARRLRMRWI EENKTCVVVVGPGCGDLRDVLGDVAVMNVIRESKVGLEIRVCKELWDMVCNGSDRVCYGPRVVESAQEMRAIETLLISDE LYRSEETGVRLKYEGLVRAVKDGGGKALVYSSMHVSAPHLAQLTGVAAILRFPLPDLEDMEDVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 381 | 381 | 8.7E-165 | – | |
| PANTHER | 1 | 381 | 381 | 8.7E-165 | ||
| Pfam | 1 | 128 | 128 | 3.3E-43 | ||
| SMART | 1 | 130 | 130 | 2.3E-43 | ||
| SUPERFAMILY | 1 | 128 | 128 | 4.58E-38 | ||
| Gene3D | 1 | 131 | 131 | 1.6E-43 | ||
| TIGRFAM | 5 | 374 | 370 | 6.2E-55 | ||
| SUPERFAMILY | 139 | 274 | 136 | 5.43E-15 | – | |
| Gene3D | 141 | 270 | 130 | 1.9E-19 | ||
| Gene3D | 271 | 383 | 113 | 5.9E-34 | ||
| SUPERFAMILY | 278 | 379 | 102 | 5.65E-25 | ||
| Pfam | 278 | 374 | 97 | 5.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nuclear-transcribed mRNA catabolic process, non-stop decay | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process, no-go decay | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation. | ||
| Biological process | RNA surveillance | The set of processes involved in identifying and degrading defective or aberrant RNAs. |
Expression pattern of LotjaGi1g1v0683200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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