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LotjaGi5g1v0204100.2

Overview

Field Value
Gene ID LotjaGi5g1v0204100
Transcript ID LotjaGi5g1v0204100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|A0A151U5G2|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:50482762..50488061) extracted from Lotus japonicus Gifu genome v1.2.

TTGCAGATGGTGCCAGTGGATCCAGATGATTTATGGTTTGCATATAACTTGATAGCTCCTGGAGATTCAGTCATGGCTGT TACCATCAGGTACTCTTCACACACACAGAAGGCTTGTTTTGTATATATTCCAGAACATCATTGTCATATTTTTGTATCTT ATAGGAAGGTTCTTAGAGAAGCTGCTAATGGTGGAAGAGATGCAGAAAGAGTGAAGTTGAAATTGGAAGTTAAAGTTGAA CAGGTAGTTTGTTTAGTTGAACAGGATTTCTTGACTGTTTTTGTCTTGTATTTAATCTTGTTTTGTTTGCAGGTTGCTGA TTATGATAAAGAAGGTTCTCTTTTGCGTGTTCGCGGAAAGAATGTTTTAGAGAATGAACATGTCAAGGTAGTTTGTTTGT TAGTTAGTTAGTTAGTTATTTAGTTGGATTAGTTGGTTAACTGCGACTGTCTGTCATTCCTGATTTTGGAAGTGCTGAAT TTGACTAATCATGTCTTGTAACTCACTGCAGATTGGAGCATTCCATACTTTAGAACTCGAGCTACAGCGACCTTTTGTGC TCAGAAAGGTGTGTCTTCTGAATCGTTATGATTCCAGTTACTGTTTCTTTCATGTTGTTATATGGGTGGTTCACAACTTC ACATACATACAAACTAAATATTTTGTTTGGACATATGCAATTATGCATGCCAAAAGTTGAAAGAAAAAATTCATGAACTT TTGTCCTTTTTGACGAATCATGAGTTCATGACTACTGAAGATCAAGTTTTTCCTTTTGTAGGATGTCTGGGATTCTCTGG CTCTGGAGGTACTCAAGCAGGCTTCTGGTATGTTATCGTTTTTCTGATGAATCTGTCAATTTTATGATTGATATTTGTGC TTATGGGAAATTAAGTTAGTATAACATGTGGGCATGGAAGCTATGAGAAGTTTATCTATAATCAAAATGTTGAATTTCTA CTTTAAGTGATATCTTAAATCCTGCACCCATTTAAGTGAAGCAAGTGGTGGAAAAATGAAATAATTGGTATATATAATCA CATTCATTTTACTAAGGAAAATGAAATTCATAATACTCGTCGGGTCAGCTTGTATTATGATTGTTGTTGTAAATCACAGT AATCAAAGTGGTGAGTAAAGATTCCGTGTATGTATCACAGATCCTGGTGCAAGTGCTGATCTAGCTGTTGTTTTGATGCA AGAAGGATTAGCTCATATCCTCCTTGTTGGTAGAAGGTACAAGTAACTTTGATTTAAATATGTTTCTTTTAGTTACTCAA AATAGCATTTTATACAGAAGATAGACTATTTGGCCATCATTCTACTCTAGTAGGATGGTAGGTTTCAGGTGTGTTAGATT TCTGGGGGGAACCATAAGCACTGGATCTTAAATACTCACTCTTATTGATATTCTAGTTAACTTTTGACTTGTAATTTTGT TGTTGCAATGAAATGATTTATCTTATTATGACTGATGTAACAGTATGACTATTACTCGTTCGCGGATCGAAAGTTCAATT CCTCGTAAGCATGGGCCTGCTATAGCTGGTTATGAGAAAGTGTGTTCGCTCTCTTTATTACAATGATAAATCAGTGAATG AATTAAATAACTTGACTGTTATGATTCTAAAGCATCGTCCTTTCTTTTGTAGGCTTTGAATAAGTTCTTTGAGAATGTAC TGCAGGTAAATTGAGCCCAAGAACTTATATTTCTCTTGTCTAGCATTTATTCTCATTAATGATATGTATTCCATATATTC AATTTAACATGGGTTTAGTATGATTACTTATTTTTCAATAAAAGGGATTCATTAAACTTATAGAATGCTAATAAAGTAAT AAAAAAATAGACCTACAATGGGTACAGCTCTTTCGTGGACCCTACTTTAGCGAGGCCAAGAGCTTTCGAAAACCAGGTTT CCCTAATGCGAATTGTATGCTGCTAATTCATGTACCCCAAAAATCTATATAACCTGATTTGGGTGTTATGTGTGGCTCTT GCTCTGAACTGGCAGGCAGCAGTTCATTCTTTACTCACTACCTTACAGTTAATTCCAATCCATGGTAAAATGATATGTTT ACAGTAATACCCATGTACCAAGTATGGGCATATTTATCAAGAATCCAATATATTAAATATCTGGTATCATTACATACCCG GATGAGGATGCCCTCGTATCAAATATTTCTTTATTGTTGGCTTTGTCTTTTCAATGTTCTTCTGCCGTGGCTTAAGAGGA TACCTCATGCTCATCTTTTGATATGTTCATTCTTTCCTCTCTTCAATAGTATTATATTTCTTCTTTTACCCAAAAAAAGT GTAAAAGGTACATTTACAAGTCTAATGGGTTCTACCTATCTGTTTTAGGCTTTCTTGAAACATGTGGATTTCAACGTCGT TCGTTGTGCTGTAATTGCAAGTCCAGGATTTACGAAAGTATGTAATTCTTTGTTCTTTCTATTTTTGCTTCTTCATTCTT AGCGAGCATTTACAATTTTGATACTACTTACATAGTTATTAATAATAAAAATATTTATCTTTAATGTTTTACACACACAA GCTCAGACAGGAATATAAGTGTGTTATACTTATATTTTATGTATCTATTTCTTTTTCAGGATCAGTTTCATCGTCACTTA TTTTTGGAGGCAGAAAGAAGACAGCTGCGAACTATTATTGAAAACAAGTCACGCATCCTTCTTGTGCACACGACCTCAGG ATACAAGTATGTTTACTTTCTTCATCACATCTCTTTTATTCTTTTTTTTTTACAAAAGCTTTGTGAGGTAACTGTCATCA AGTAACACAAATGAAAATTATTGTGGCCAATTAGATGTAGTTTGACTTGCACAATTTTTCTGATGTGATACGTTGTTGCA TACGTGTATGTTCCAAACTTTATTGTTTGGGGCTGATGAAGACGGCTGCAACCTGTTATTGTTGCAACCCATGATTTACC TGTATTAACACTTGATTCAACAAAGCTATACACCCATATTGTTTGAGGCTGGTGGCTGGAATAGGTTTACTTATTGTATC TGCTTCATATGTAAGGTGTTAAGTGAGTGGAAATCTCATGCATTCCCATTTAAAATATAAAAGCAAGAATATGGCAACAA ACATAGATTGACAAAAAAGTTGTTTTACTTTAAGGATGGACTTTGCGTGTGGGTACTTAGTATTTGATTTATCTTATATC TTTCACATGAACATTTCTTTTCTGTAGGCATAGTTTAAGAGAGGTTCTGGATGCTCCAAATGTCATGAATTTGATAAAAG ATACAAAGGCAGCGCAAGAGGTACCGTCAAAATCAAAATAGTAGACATTTTCTAACTTTTCCATGTGGCCTTGCTGAATA GTTTCCTTATCCTGTTTATTATTTTTCTGTTGAGCCTGAAAAAAGCTTTGTTCTTTTCCTTTTTCTTCAGGTTCGAGTTC TGCAGGACTTCTACAACATGCTTTCAAATGTCAGGTTCTATTATTGAGATGTTTTTATTTTCCTTGCCTATGTTTATGGT TGAAATATCAGTTTCCGTTTTAAAAAATACATGTTACCAATTATTTGAAGATTAGTTCATTTTCTAGATTTGACAGGGTT AGAGACTCATAAATTTAGGTGGATAAATAGGGTCTGTGTGTAACTTTAAAACCAGCACAGAAGTATCCATGCATCCTAGG ATTACCTTATTGTATGCATGAAAATATGATATCATATCAGATGGAGATGTTTATATTCATTGTCCTGAATTGTTTCATTA CGTAATTTCTATGTTTGAACTGCACATTTCATTGATTGAACAAACCCTTATTATTCCTGAGTGTTATAGTAATTGTTCTT TGTTGAGTACAACCAAGAGTTGAGTGTTACTAATTAGACACTGGATAAGCTAAAAAGTCATCATCCACAGGATTTTCCAT GAGAAATCGTATTCTCAAGTTTTATGTCTCGTGCAGTCGTGCATAATCAAGTATTTAATGTAATATTTTGCAAAAGAAAA AAGTGCTCAAAAGCCCAAAGGAAGCAGCATCTTAGCATAAAAGGAGTATCACATACTTCTCCCATTAACTGATTGTTGTA TGAAAATTGTGAAAATGGCTACCTAAATGTCACATTTTCATATATCTAGGAATTCCTGATTGAATCTTTTTGCGGGTGAA ACAGGATTCAGCACGTGCTTGTTATGGAATGAAACATGTTGAGGTTGCTAATGAACGACTAGCTGTGCAGACTCTTCTAA TTACAGATGAACTTTTCAGGTTTGCATGTCATATAACCCTAAGATATTCTGAATCAAAGACGGTTTGTTGGATTTCTCTA TCCAATCCATGAGAAATACTAACAGTACACTCTTTAATCCACTTTTTTCAATACCCTATTCTCGGGAGAAATTCTTGTGG ATCCTACCAAATAGAGTGGAGCCCTCATGATTTAGTAGATATCACAAGGATTTTACCCTGTAATGAAGAGTATGCTGATA GCATTTCTCTTTGGTTTCTGTAAACTTTGACAATGATATATCCTGGATTTTTGTTGATTCAGCCATGTAACTTATCTGTC TCTTTTACATCCTGGGAAATGGTTTATACCAAACTTGTCTGATACTGCACAGTTTGTTTTAGGACAAAACTTGGATAAGT ACTATTAGGTATTGTTTATGTTGTTACCCAATGAAAAGTTCAGCTACCCATTTTCTTTATATTTTATTAATGCGGTAATT TCCATCAACTTCTCTTTCTTTTAACACACGTGTCATGCTGTAATTGGACAACAGTAAAAGCAACATGTATGGAACCACAT CTAAGTTTTTCCTTTGTTTTATAGAAATATATTTTGGTTTAACTGAATTTTATCTTTCTGATACCGTCCGAGTTGTTTGC TTGGGATGCAATCTAGAAAGGGCCCCTTTTGATGTTTTGAAATGATAGATAATTATAACTTCAATAATCAATCTACATAC TTTTGGTTATAGGAATTCGGATATAGCAGCAAGGAAAAAGTTTGTTAACTTGGTCAATTCAATTAAGGATTCAGGAGGCA CCGTCCACGTATTTTCATCCATGCATGTCTCTGGAGAACGTAAGTATTAGGATTGGCTAATCATTTTATTTTATTCCTCC AGTTTTTTTTGTTGTGGGAGCAATTCTGGAAGTAAATGAAACTTCTGTTCAAACATTTCTGTTCAAATTTTCAGTTTATT TGATTCAATTTGTTATTGATGGACAGAGCTAGCACAGATAAGTGGCATTGCTGCAATTCTTCGGTTTCCTCTCCCTGATC TTGAAGACATTGAGATGTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0204100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGCCAGTGGATCCAGATGATTTATGGTTTGCATATAACTTGATAGCTCCTGGAGATTCAGTCATGGCTGTTACCAT CAGGAAGGTTCTTAGAGAAGCTGCTAATGGTGGAAGAGATGCAGAAAGAGTGAAGTTGAAATTGGAAGTTAAAGTTGAAC AGGTTGCTGATTATGATAAAGAAGGTTCTCTTTTGCGTGTTCGCGGAAAGAATGTTTTAGAGAATGAACATGTCAAGATT GGAGCATTCCATACTTTAGAACTCGAGCTACAGCGACCTTTTGTGCTCAGAAAGGATGTCTGGGATTCTCTGGCTCTGGA GGTACTCAAGCAGGCTTCTGATCCTGGTGCAAGTGCTGATCTAGCTGTTGTTTTGATGCAAGAAGGATTAGCTCATATCC TCCTTGTTGGTAGAAGTATGACTATTACTCGTTCGCGGATCGAAAGTTCAATTCCTCGTAAGCATGGGCCTGCTATAGCT GGTTATGAGAAAGCTTTGAATAAGTTCTTTGAGAATGTACTGCAGGCTTTCTTGAAACATGTGGATTTCAACGTCGTTCG TTGTGCTGTAATTGCAAGTCCAGGATTTACGAAAGATCAGTTTCATCGTCACTTATTTTTGGAGGCAGAAAGAAGACAGC TGCGAACTATTATTGAAAACAAGTCACGCATCCTTCTTGTGCACACGACCTCAGGATACAAGCATAGTTTAAGAGAGGTT CTGGATGCTCCAAATGTCATGAATTTGATAAAAGATACAAAGGCAGCGCAAGAGGTTCGAGTTCTGCAGGACTTCTACAA CATGCTTTCAAATGATTCAGCACGTGCTTGTTATGGAATGAAACATGTTGAGGTTGCTAATGAACGACTAGCTGTGCAGA CTCTTCTAATTACAGATGAACTTTTCAGGAATTCGGATATAGCAGCAAGGAAAAAGTTTGTTAACTTGGTCAATTCAATT AAGGATTCAGGAGGCACCGTCCACGTATTTTCATCCATGCATGTCTCTGGAGAACGTAAAGCTAGCACAGATAAGTGGCA TTGCTGCAATTCTTCGGTTTCCTCTCCCTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0204100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVPVDPDDLWFAYNLIAPGDSVMAVTIRKVLREAANGGRDAERVKLKLEVKVEQVADYDKEGSLLRVRGKNVLENEHVKI GAFHTLELELQRPFVLRKDVWDSLALEVLKQASDPGASADLAVVLMQEGLAHILLVGRSMTITRSRIESSIPRKHGPAIA GYEKALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLFLEAERRQLRTIIENKSRILLVHTTSGYKHSLREV LDAPNVMNLIKDTKAAQEVRVLQDFYNMLSNDSARACYGMKHVEVANERLAVQTLLITDELFRNSDIAARKKFVNLVNSI KDSGGTVHVFSSMHVSGERKASTDKWHCCNSSVSSP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10853
1 339 339 6.8E-167
IPR004405
Pfam
PF03463
1 112 112 1.8E-42
IPR005140
SMART
SM01194
1 114 114 1.3E-34
IPR005140
Gene3D
G3DSA:2.30.30.870
1 116 116 3.3E-37
IPR038069
SUPERFAMILY
SSF159065
1 114 114 2.35E-33
IPR038069
TIGRFAM
TIGR00111
2 339 338 9.3E-59
IPR004405
SUPERFAMILY
SSF53137
116 255 140 1.83E-47 –
Gene3D
G3DSA:3.30.420.60
120 251 132 7.3E-53
IPR042226
Pfam
PF03464
121 252 132 3.1E-30
IPR005141
SUPERFAMILY
SSF55315
248 339 92 1.47E-24
IPR029064
Gene3D
G3DSA:3.30.1330.30
252 343 92 8.8E-34
IPR029064
Pfam
PF03465
256 339 84 1.5E-17
IPR005142

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0070481
Biological process Nuclear-transcribed mRNA catabolic process, non-stop decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon.
Subterm of
GO:0070966
Biological process Nuclear-transcribed mRNA catabolic process, no-go decay The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation.
Subterm of
GO:0071025
Biological process RNA surveillance The set of processes involved in identifying and degrading defective or aberrant RNAs.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0204100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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