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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0204100 |
| Transcript ID | LotjaGi5g1v0204100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|V7BDS6|V7BDS6_PHAVU Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50482363..50488312) extracted from Lotus japonicus Gifu genome v1.2.
AAGGTTTATATCCCCTGTGGCGATACCCATTGTTGAGCGTGTTCATCTTCGAATAAGAGGAAGAAAAATAGGTAGAAGAA GAAGAAGAAGAAGTAGCAAAAACCATGAGAATCGTTCGCAAAGACCTTGTACCCAATGGACCTGGAAGCGTTAAGGTTCA ATTCCAATTCCAATTCCAATTCTAGCTCCAGTTCCAATTTCAATTTCATCGAGTTTTGATTGATTTGCAGAATTTTTGTT GATTTTTTGGTTTGCAGATGGTGCCAGTGGATCCAGATGATTTATGGTTTGCATATAACTTGATAGCTCCTGGAGATTCA GTCATGGCTGTTACCATCAGGTACTCTTCACACACACAGAAGGCTTGTTTTGTATATATTCCAGAACATCATTGTCATAT TTTTGTATCTTATAGGAAGGTTCTTAGAGAAGCTGCTAATGGTGGAAGAGATGCAGAAAGAGTGAAGTTGAAATTGGAAG TTAAAGTTGAACAGGTAGTTTGTTTAGTTGAACAGGATTTCTTGACTGTTTTTGTCTTGTATTTAATCTTGTTTTGTTTG CAGGTTGCTGATTATGATAAAGAAGGTTCTCTTTTGCGTGTTCGCGGAAAGAATGTTTTAGAGAATGAACATGTCAAGGT AGTTTGTTTGTTAGTTAGTTAGTTAGTTATTTAGTTGGATTAGTTGGTTAACTGCGACTGTCTGTCATTCCTGATTTTGG AAGTGCTGAATTTGACTAATCATGTCTTGTAACTCACTGCAGATTGGAGCATTCCATACTTTAGAACTCGAGCTACAGCG ACCTTTTGTGCTCAGAAAGGTGTGTCTTCTGAATCGTTATGATTCCAGTTACTGTTTCTTTCATGTTGTTATATGGGTGG TTCACAACTTCACATACATACAAACTAAATATTTTGTTTGGACATATGCAATTATGCATGCCAAAAGTTGAAAGAAAAAA TTCATGAACTTTTGTCCTTTTTGACGAATCATGAGTTCATGACTACTGAAGATCAAGTTTTTCCTTTTGTAGGATGTCTG GGATTCTCTGGCTCTGGAGGTACTCAAGCAGGCTTCTGGTATGTTATCGTTTTTCTGATGAATCTGTCAATTTTATGATT GATATTTGTGCTTATGGGAAATTAAGTTAGTATAACATGTGGGCATGGAAGCTATGAGAAGTTTATCTATAATCAAAATG TTGAATTTCTACTTTAAGTGATATCTTAAATCCTGCACCCATTTAAGTGAAGCAAGTGGTGGAAAAATGAAATAATTGGT ATATATAATCACATTCATTTTACTAAGGAAAATGAAATTCATAATACTCGTCGGGTCAGCTTGTATTATGATTGTTGTTG TAAATCACAGTAATCAAAGTGGTGAGTAAAGATTCCGTGTATGTATCACAGATCCTGGTGCAAGTGCTGATCTAGCTGTT GTTTTGATGCAAGAAGGATTAGCTCATATCCTCCTTGTTGGTAGAAGGTACAAGTAACTTTGATTTAAATATGTTTCTTT TAGTTACTCAAAATAGCATTTTATACAGAAGATAGACTATTTGGCCATCATTCTACTCTAGTAGGATGGTAGGTTTCAGG TGTGTTAGATTTCTGGGGGGAACCATAAGCACTGGATCTTAAATACTCACTCTTATTGATATTCTAGTTAACTTTTGACT TGTAATTTTGTTGTTGCAATGAAATGATTTATCTTATTATGACTGATGTAACAGTATGACTATTACTCGTTCGCGGATCG AAAGTTCAATTCCTCGTAAGCATGGGCCTGCTATAGCTGGTTATGAGAAAGTGTGTTCGCTCTCTTTATTACAATGATAA ATCAGTGAATGAATTAAATAACTTGACTGTTATGATTCTAAAGCATCGTCCTTTCTTTTGTAGGCTTTGAATAAGTTCTT TGAGAATGTACTGCAGGTAAATTGAGCCCAAGAACTTATATTTCTCTTGTCTAGCATTTATTCTCATTAATGATATGTAT TCCATATATTCAATTTAACATGGGTTTAGTATGATTACTTATTTTTCAATAAAAGGGATTCATTAAACTTATAGAATGCT AATAAAGTAATAAAAAAATAGACCTACAATGGGTACAGCTCTTTCGTGGACCCTACTTTAGCGAGGCCAAGAGCTTTCGA AAACCAGGTTTCCCTAATGCGAATTGTATGCTGCTAATTCATGTACCCCAAAAATCTATATAACCTGATTTGGGTGTTAT GTGTGGCTCTTGCTCTGAACTGGCAGGCAGCAGTTCATTCTTTACTCACTACCTTACAGTTAATTCCAATCCATGGTAAA ATGATATGTTTACAGTAATACCCATGTACCAAGTATGGGCATATTTATCAAGAATCCAATATATTAAATATCTGGTATCA TTACATACCCGGATGAGGATGCCCTCGTATCAAATATTTCTTTATTGTTGGCTTTGTCTTTTCAATGTTCTTCTGCCGTG GCTTAAGAGGATACCTCATGCTCATCTTTTGATATGTTCATTCTTTCCTCTCTTCAATAGTATTATATTTCTTCTTTTAC CCAAAAAAAGTGTAAAAGGTACATTTACAAGTCTAATGGGTTCTACCTATCTGTTTTAGGCTTTCTTGAAACATGTGGAT TTCAACGTCGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACGAAAGTATGTAATTCTTTGTTCTTTCTATTTTTGCT TCTTCATTCTTAGCGAGCATTTACAATTTTGATACTACTTACATAGTTATTAATAATAAAAATATTTATCTTTAATGTTT TACACACACAAGCTCAGACAGGAATATAAGTGTGTTATACTTATATTTTATGTATCTATTTCTTTTTCAGGATCAGTTTC ATCGTCACTTATTTTTGGAGGCAGAAAGAAGACAGCTGCGAACTATTATTGAAAACAAGTCACGCATCCTTCTTGTGCAC ACGACCTCAGGATACAAGTATGTTTACTTTCTTCATCACATCTCTTTTATTCTTTTTTTTTTACAAAAGCTTTGTGAGGT AACTGTCATCAAGTAACACAAATGAAAATTATTGTGGCCAATTAGATGTAGTTTGACTTGCACAATTTTTCTGATGTGAT ACGTTGTTGCATACGTGTATGTTCCAAACTTTATTGTTTGGGGCTGATGAAGACGGCTGCAACCTGTTATTGTTGCAACC CATGATTTACCTGTATTAACACTTGATTCAACAAAGCTATACACCCATATTGTTTGAGGCTGGTGGCTGGAATAGGTTTA CTTATTGTATCTGCTTCATATGTAAGGTGTTAAGTGAGTGGAAATCTCATGCATTCCCATTTAAAATATAAAAGCAAGAA TATGGCAACAAACATAGATTGACAAAAAAGTTGTTTTACTTTAAGGATGGACTTTGCGTGTGGGTACTTAGTATTTGATT TATCTTATATCTTTCACATGAACATTTCTTTTCTGTAGGCATAGTTTAAGAGAGGTTCTGGATGCTCCAAATGTCATGAA TTTGATAAAAGATACAAAGGCAGCGCAAGAGGTACCGTCAAAATCAAAATAGTAGACATTTTCTAACTTTTCCATGTGGC CTTGCTGAATAGTTTCCTTATCCTGTTTATTATTTTTCTGTTGAGCCTGAAAAAAGCTTTGTTCTTTTCCTTTTTCTTCA GGTTCGAGTTCTGCAGGACTTCTACAACATGCTTTCAAATGTCAGGTTCTATTATTGAGATGTTTTTATTTTCCTTGCCT ATGTTTATGGTTGAAATATCAGTTTCCGTTTTAAAAAATACATGTTACCAATTATTTGAAGATTAGTTCATTTTCTAGAT TTGACAGGGTTAGAGACTCATAAATTTAGGTGGATAAATAGGGTCTGTGTGTAACTTTAAAACCAGCACAGAAGTATCCA TGCATCCTAGGATTACCTTATTGTATGCATGAAAATATGATATCATATCAGATGGAGATGTTTATATTCATTGTCCTGAA TTGTTTCATTACGTAATTTCTATGTTTGAACTGCACATTTCATTGATTGAACAAACCCTTATTATTCCTGAGTGTTATAG TAATTGTTCTTTGTTGAGTACAACCAAGAGTTGAGTGTTACTAATTAGACACTGGATAAGCTAAAAAGTCATCATCCACA GGATTTTCCATGAGAAATCGTATTCTCAAGTTTTATGTCTCGTGCAGTCGTGCATAATCAAGTATTTAATGTAATATTTT GCAAAAGAAAAAAGTGCTCAAAAGCCCAAAGGAAGCAGCATCTTAGCATAAAAGGAGTATCACATACTTCTCCCATTAAC TGATTGTTGTATGAAAATTGTGAAAATGGCTACCTAAATGTCACATTTTCATATATCTAGGAATTCCTGATTGAATCTTT TTGCGGGTGAAACAGGATTCAGCACGTGCTTGTTATGGAATGAAACATGTTGAGGTTGCTAATGAACGACTAGCTGTGCA GACTCTTCTAATTACAGATGAACTTTTCAGGTTTGCATGTCATATAACCCTAAGATATTCTGAATCAAAGACGGTTTGTT GGATTTCTCTATCCAATCCATGAGAAATACTAACAGTACACTCTTTAATCCACTTTTTTCAATACCCTATTCTCGGGAGA AATTCTTGTGGATCCTACCAAATAGAGTGGAGCCCTCATGATTTAGTAGATATCACAAGGATTTTACCCTGTAATGAAGA GTATGCTGATAGCATTTCTCTTTGGTTTCTGTAAACTTTGACAATGATATATCCTGGATTTTTGTTGATTCAGCCATGTA ACTTATCTGTCTCTTTTACATCCTGGGAAATGGTTTATACCAAACTTGTCTGATACTGCACAGTTTGTTTTAGGACAAAA CTTGGATAAGTACTATTAGGTATTGTTTATGTTGTTACCCAATGAAAAGTTCAGCTACCCATTTTCTTTATATTTTATTA ATGCGGTAATTTCCATCAACTTCTCTTTCTTTTAACACACGTGTCATGCTGTAATTGGACAACAGTAAAAGCAACATGTA TGGAACCACATCTAAGTTTTTCCTTTGTTTTATAGAAATATATTTTGGTTTAACTGAATTTTATCTTTCTGATACCGTCC GAGTTGTTTGCTTGGGATGCAATCTAGAAAGGGCCCCTTTTGATGTTTTGAAATGATAGATAATTATAACTTCAATAATC AATCTACATACTTTTGGTTATAGGAATTCGGATATAGCAGCAAGGAAAAAGTTTGTTAACTTGGTCAATTCAATTAAGGA TTCAGGAGGCACCGTCCACGTATTTTCATCCATGCATGTCTCTGGAGAACGTAAGTATTAGGATTGGCTAATCATTTTAT TTTATTCCTCCAGTTTTTTTTGTTGTGGGAGCAATTCTGGAAGTAAATGAAACTTCTGTTCAAACATTTCTGTTCAAATT TTCAGTTTATTTGATTCAATTTGTTATTGATGGACAGAGCTAGCACAGATAAGTGGCATTGCTGCAATTCTTCGGTTTCC TCTCCCTGATCTTGAAGACATTGAGATGTGATGCACATTGTTGGTCAAGCTCAAGCATGTTGGTGTTGGCCACTCATCTT TATTTTTATTTTATACTTGTATTAAATAGGGTTTAAATTATAACACACCCTGACCCTGAGAACCAGGGACTTGTATTATA TTTTTTTGGTGTTAGGGACTTGTATTATATAAACCAGGCAATGCCGATCAATAGTGCAAGCTATTTAATGCCGAGTGTGT CTATGTTTTGGGGTGAATCGCTGTGCACCACGACTAGTGCATGGTCAAACGACACATGATCGTGACTCTTATGATAAATC TCAATGTGACTCTCACAATGATTCCTATGAAAAATCACAAATGGAAAGATTACTTTATTCTAAATTTATATTTTTTGAGA TCACAATGAACAAACAACTTCTAAATTTGA
CDS sequence (LotjaGi5g1v0204100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATCGTTCGCAAAGACCTTGTACCCAATGGACCTGGAAGCGTTAAGATGGTGCCAGTGGATCCAGATGATTTATG GTTTGCATATAACTTGATAGCTCCTGGAGATTCAGTCATGGCTGTTACCATCAGGAAGGTTCTTAGAGAAGCTGCTAATG GTGGAAGAGATGCAGAAAGAGTGAAGTTGAAATTGGAAGTTAAAGTTGAACAGGTTGCTGATTATGATAAAGAAGGTTCT CTTTTGCGTGTTCGCGGAAAGAATGTTTTAGAGAATGAACATGTCAAGATTGGAGCATTCCATACTTTAGAACTCGAGCT ACAGCGACCTTTTGTGCTCAGAAAGGATGTCTGGGATTCTCTGGCTCTGGAGGTACTCAAGCAGGCTTCTGATCCTGGTG CAAGTGCTGATCTAGCTGTTGTTTTGATGCAAGAAGGATTAGCTCATATCCTCCTTGTTGGTAGAAGTATGACTATTACT CGTTCGCGGATCGAAAGTTCAATTCCTCGTAAGCATGGGCCTGCTATAGCTGGTTATGAGAAAGCTTTGAATAAGTTCTT TGAGAATGTACTGCAGGCTTTCTTGAAACATGTGGATTTCAACGTCGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTA CGAAAGATCAGTTTCATCGTCACTTATTTTTGGAGGCAGAAAGAAGACAGCTGCGAACTATTATTGAAAACAAGTCACGC ATCCTTCTTGTGCACACGACCTCAGGATACAAGCATAGTTTAAGAGAGGTTCTGGATGCTCCAAATGTCATGAATTTGAT AAAAGATACAAAGGCAGCGCAAGAGGTTCGAGTTCTGCAGGACTTCTACAACATGCTTTCAAATGATTCAGCACGTGCTT GTTATGGAATGAAACATGTTGAGGTTGCTAATGAACGACTAGCTGTGCAGACTCTTCTAATTACAGATGAACTTTTCAGG AATTCGGATATAGCAGCAAGGAAAAAGTTTGTTAACTTGGTCAATTCAATTAAGGATTCAGGAGGCACCGTCCACGTATT TTCATCCATGCATGTCTCTGGAGAACAGCTAGCACAGATAAGTGGCATTGCTGCAATTCTTCGGTTTCCTCTCCCTGATC TTGAAGACATTGAGATGTGA
Protein sequence (LotjaGi5g1v0204100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIVRKDLVPNGPGSVKMVPVDPDDLWFAYNLIAPGDSVMAVTIRKVLREAANGGRDAERVKLKLEVKVEQVADYDKEGS LLRVRGKNVLENEHVKIGAFHTLELELQRPFVLRKDVWDSLALEVLKQASDPGASADLAVVLMQEGLAHILLVGRSMTIT RSRIESSIPRKHGPAIAGYEKALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLFLEAERRQLRTIIENKSR ILLVHTTSGYKHSLREVLDAPNVMNLIKDTKAAQEVRVLQDFYNMLSNDSARACYGMKHVEVANERLAVQTLLITDELFR NSDIAARKKFVNLVNSIKDSGGTVHVFSSMHVSGEQLAQISGIAAILRFPLPDLEDIEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 379 | 379 | 5.1E-187 | ||
| Pfam | 1 | 129 | 129 | 7.8E-50 | ||
| SMART | 1 | 131 | 131 | 7.2E-47 | ||
| SUPERFAMILY | 1 | 131 | 131 | 6.93E-38 | ||
| Gene3D | 1 | 133 | 133 | 1.4E-42 | ||
| TIGRFAM | 2 | 371 | 370 | 2.9E-69 | ||
| SUPERFAMILY | 133 | 272 | 140 | 2.09E-47 | – | |
| Gene3D | 137 | 268 | 132 | 8.4E-53 | ||
| Pfam | 138 | 269 | 132 | 3.6E-30 | ||
| SUPERFAMILY | 265 | 371 | 107 | 1.47E-33 | ||
| Gene3D | 269 | 379 | 111 | 7.5E-47 | ||
| Pfam | 273 | 371 | 99 | 1.2E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nuclear-transcribed mRNA catabolic process, non-stop decay | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process, no-go decay | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation. | ||
| Biological process | RNA surveillance | The set of processes involved in identifying and degrading defective or aberrant RNAs. |
Expression pattern of LotjaGi5g1v0204100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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