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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0204100 |
| Transcript ID | LotjaGi5g1v0204100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein pelota homolog; TAIR: AT4G27650.1 Eukaryotic release factor 1 (eRF1) family protein; Swiss-Prot: sp|Q9ZT87|PEL1_ARATH Protein PELOTA 1; TrEMBL-Plants: tr|A0A151U5G2|A0A151U5G2_CAJCA Protein pelota homolog; Found in the gene: LotjaGi5g1v0204100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50482762..50488208) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAATCGTTCGCAAAGACCTTGTACCCAATGGACCTGGAAGCGTTAAGGTTCAATTCCAATTCCAATTCCAATTCTA GCTCCAGTTCCAATTTCAATTTCATCGAGTTTTGATTGATTTGCAGAATTTTTGTTGATTTTTTGGTTTGCAGATGGTGC CAGTGGATCCAGATGATTTATGGTTTGCATATAACTTGATAGCTCCTGGAGATTCAGTCATGGCTGTTACCATCAGGTAC TCTTCACACACACAGAAGGCTTGTTTTGTATATATTCCAGAACATCATTGTCATATTTTTGTATCTTATAGGAAGGTTCT TAGAGAAGCTGCTAATGGTGGAAGAGATGCAGAAAGAGTGAAGTTGAAATTGGAAGTTAAAGTTGAACAGGTAGTTTGTT TAGTTGAACAGGATTTCTTGACTGTTTTTGTCTTGTATTTAATCTTGTTTTGTTTGCAGGTTGCTGATTATGATAAAGAA GGTTCTCTTTTGCGTGTTCGCGGAAAGAATGTTTTAGAGAATGAACATGTCAAGGTAGTTTGTTTGTTAGTTAGTTAGTT AGTTATTTAGTTGGATTAGTTGGTTAACTGCGACTGTCTGTCATTCCTGATTTTGGAAGTGCTGAATTTGACTAATCATG TCTTGTAACTCACTGCAGATTGGAGCATTCCATACTTTAGAACTCGAGCTACAGCGACCTTTTGTGCTCAGAAAGGTGTG TCTTCTGAATCGTTATGATTCCAGTTACTGTTTCTTTCATGTTGTTATATGGGTGGTTCACAACTTCACATACATACAAA CTAAATATTTTGTTTGGACATATGCAATTATGCATGCCAAAAGTTGAAAGAAAAAATTCATGAACTTTTGTCCTTTTTGA CGAATCATGAGTTCATGACTACTGAAGATCAAGTTTTTCCTTTTGTAGGATGTCTGGGATTCTCTGGCTCTGGAGGTACT CAAGCAGGCTTCTGGTATGTTATCGTTTTTCTGATGAATCTGTCAATTTTATGATTGATATTTGTGCTTATGGGAAATTA AGTTAGTATAACATGTGGGCATGGAAGCTATGAGAAGTTTATCTATAATCAAAATGTTGAATTTCTACTTTAAGTGATAT CTTAAATCCTGCACCCATTTAAGTGAAGCAAGTGGTGGAAAAATGAAATAATTGGTATATATAATCACATTCATTTTACT AAGGAAAATGAAATTCATAATACTCGTCGGGTCAGCTTGTATTATGATTGTTGTTGTAAATCACAGTAATCAAAGTGGTG AGTAAAGATTCCGTGTATGTATCACAGATCCTGGTGCAAGTGCTGATCTAGCTGTTGTTTTGATGCAAGAAGGATTAGCT CATATCCTCCTTGTTGGTAGAAGGTACAAGTAACTTTGATTTAAATATGTTTCTTTTAGTTACTCAAAATAGCATTTTAT ACAGAAGATAGACTATTTGGCCATCATTCTACTCTAGTAGGATGGTAGGTTTCAGGTGTGTTAGATTTCTGGGGGGAACC ATAAGCACTGGATCTTAAATACTCACTCTTATTGATATTCTAGTTAACTTTTGACTTGTAATTTTGTTGTTGCAATGAAA TGATTTATCTTATTATGACTGATGTAACAGTATGACTATTACTCGTTCGCGGATCGAAAGTTCAATTCCTCGTAAGCATG GGCCTGCTATAGCTGGTTATGAGAAAGTGTGTTCGCTCTCTTTATTACAATGATAAATCAGTGAATGAATTAAATAACTT GACTGTTATGATTCTAAAGCATCGTCCTTTCTTTTGTAGGCTTTGAATAAGTTCTTTGAGAATGTACTGCAGGTAAATTG AGCCCAAGAACTTATATTTCTCTTGTCTAGCATTTATTCTCATTAATGATATGTATTCCATATATTCAATTTAACATGGG TTTAGTATGATTACTTATTTTTCAATAAAAGGGATTCATTAAACTTATAGAATGCTAATAAAGTAATAAAAAAATAGACC TACAATGGGTACAGCTCTTTCGTGGACCCTACTTTAGCGAGGCCAAGAGCTTTCGAAAACCAGGTTTCCCTAATGCGAAT TGTATGCTGCTAATTCATGTACCCCAAAAATCTATATAACCTGATTTGGGTGTTATGTGTGGCTCTTGCTCTGAACTGGC AGGCAGCAGTTCATTCTTTACTCACTACCTTACAGTTAATTCCAATCCATGGTAAAATGATATGTTTACAGTAATACCCA TGTACCAAGTATGGGCATATTTATCAAGAATCCAATATATTAAATATCTGGTATCATTACATACCCGGATGAGGATGCCC TCGTATCAAATATTTCTTTATTGTTGGCTTTGTCTTTTCAATGTTCTTCTGCCGTGGCTTAAGAGGATACCTCATGCTCA TCTTTTGATATGTTCATTCTTTCCTCTCTTCAATAGTATTATATTTCTTCTTTTACCCAAAAAAAGTGTAAAAGGTACAT TTACAAGTCTAATGGGTTCTACCTATCTGTTTTAGGCTTTCTTGAAACATGTGGATTTCAACGTCGTTCGTTGTGCTGTA ATTGCAAGTCCAGGATTTACGAAAGTATGTAATTCTTTGTTCTTTCTATTTTTGCTTCTTCATTCTTAGCGAGCATTTAC AATTTTGATACTACTTACATAGTTATTAATAATAAAAATATTTATCTTTAATGTTTTACACACACAAGCTCAGACAGGAA TATAAGTGTGTTATACTTATATTTTATGTATCTATTTCTTTTTCAGGATCAGTTTCATCGTCACTTATTTTTGGAGGCAG AAAGAAGACAGCTGCGAACTATTATTGAAAACAAGTCACGCATCCTTCTTGTGCACACGACCTCAGGATACAAGTATGTT TACTTTCTTCATCACATCTCTTTTATTCTTTTTTTTTTACAAAAGCTTTGTGAGGTAACTGTCATCAAGTAACACAAATG AAAATTATTGTGGCCAATTAGATGTAGTTTGACTTGCACAATTTTTCTGATGTGATACGTTGTTGCATACGTGTATGTTC CAAACTTTATTGTTTGGGGCTGATGAAGACGGCTGCAACCTGTTATTGTTGCAACCCATGATTTACCTGTATTAACACTT GATTCAACAAAGCTATACACCCATATTGTTTGAGGCTGGTGGCTGGAATAGGTTTACTTATTGTATCTGCTTCATATGTA AGGTGTTAAGTGAGTGGAAATCTCATGCATTCCCATTTAAAATATAAAAGCAAGAATATGGCAACAAACATAGATTGACA AAAAAGTTGTTTTACTTTAAGGATGGACTTTGCGTGTGGGTACTTAGTATTTGATTTATCTTATATCTTTCACATGAACA TTTCTTTTCTGTAGGCATAGTTTAAGAGAGGTTCTGGATGCTCCAAATGTCATGAATTTGATAAAAGATACAAAGGCAGC GCAAGAGGTACCGTCAAAATCAAAATAGTAGACATTTTCTAACTTTTCCATGTGGCCTTGCTGAATAGTTTCCTTATCCT GTTTATTATTTTTCTGTTGAGCCTGAAAAAAGCTTTGTTCTTTTCCTTTTTCTTCAGGTTCGAGTTCTGCAGGACTTCTA CAACATGCTTTCAAATGTCAGGTTCTATTATTGAGATGTTTTTATTTTCCTTGCCTATGTTTATGGTTGAAATATCAGTT TCCGTTTTAAAAAATACATGTTACCAATTATTTGAAGATTAGTTCATTTTCTAGATTTGACAGGGTTAGAGACTCATAAA TTTAGGTGGATAAATAGGGTCTGTGTGTAACTTTAAAACCAGCACAGAAGTATCCATGCATCCTAGGATTACCTTATTGT ATGCATGAAAATATGATATCATATCAGATGGAGATGTTTATATTCATTGTCCTGAATTGTTTCATTACGTAATTTCTATG TTTGAACTGCACATTTCATTGATTGAACAAACCCTTATTATTCCTGAGTGTTATAGTAATTGTTCTTTGTTGAGTACAAC CAAGAGTTGAGTGTTACTAATTAGACACTGGATAAGCTAAAAAGTCATCATCCACAGGATTTTCCATGAGAAATCGTATT CTCAAGTTTTATGTCTCGTGCAGTCGTGCATAATCAAGTATTTAATGTAATATTTTGCAAAAGAAAAAAGTGCTCAAAAG CCCAAAGGAAGCAGCATCTTAGCATAAAAGGAGTATCACATACTTCTCCCATTAACTGATTGTTGTATGAAAATTGTGAA AATGGCTACCTAAATGTCACATTTTCATATATCTAGGAATTCCTGATTGAATCTTTTTGCGGGTGAAACAGGATTCAGCA CGTGCTTGTTATGGAATGAAACATGTTGAGGTTGCTAATGAACGACTAGCTGTGCAGACTCTTCTAATTACAGATGAACT TTTCAGGTTTGCATGTCATATAACCCTAAGATATTCTGAATCAAAGACGGTTTGTTGGATTTCTCTATCCAATCCATGAG AAATACTAACAGTACACTCTTTAATCCACTTTTTTCAATACCCTATTCTCGGGAGAAATTCTTGTGGATCCTACCAAATA GAGTGGAGCCCTCATGATTTAGTAGATATCACAAGGATTTTACCCTGTAATGAAGAGTATGCTGATAGCATTTCTCTTTG GTTTCTGTAAACTTTGACAATGATATATCCTGGATTTTTGTTGATTCAGCCATGTAACTTATCTGTCTCTTTTACATCCT GGGAAATGGTTTATACCAAACTTGTCTGATACTGCACAGTTTGTTTTAGGACAAAACTTGGATAAGTACTATTAGGTATT GTTTATGTTGTTACCCAATGAAAAGTTCAGCTACCCATTTTCTTTATATTTTATTAATGCGGTAATTTCCATCAACTTCT CTTTCTTTTAACACACGTGTCATGCTGTAATTGGACAACAGTAAAAGCAACATGTATGGAACCACATCTAAGTTTTTCCT TTGTTTTATAGAAATATATTTTGGTTTAACTGAATTTTATCTTTCTGATACCGTCCGAGTTGTTTGCTTGGGATGCAATC TAGAAAGGGCCCCTTTTGATGTTTTGAAATGATAGATAATTATAACTTCAATAATCAATCTACATACTTTTGGTTATAGG AATTCGGATATAGCAGCAAGGAAAAAGTTTGTTAACTTGGTCAATTCAATTAAGGATTCAGGAGGCACCGTCCACGTATT TTCATCCATGCATGTCTCTGGAGAACGTAAGTATTAGGATTGGCTAATCATTTTATTTTATTCCTCCAGTTTTTTTTGTT GTGGGAGCAATTCTGGAAGTAAATGAAACTTCTGTTCAAACATTTCTGTTCAAATTTTCAGTTTATTTGATTCAATTTGT TATTGATGGACAGAGCTAGCACAGATAAGTGGCATTGCTGCAATTCTTCGGTTTCCTCTCCCTGATCTTGAAGACATTGA GATGTGA
CDS sequence (LotjaGi5g1v0204100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATCGTTCGCAAAGACCTTGTACCCAATGGACCTGGAAGCGTTAAGATGGTGCCAGTGGATCCAGATGATTTATG GTTTGCATATAACTTGATAGCTCCTGGAGATTCAGTCATGGCTGTTACCATCAGGAAGGTTCTTAGAGAAGCTGCTAATG GTGGAAGAGATGCAGAAAGAGTGAAGTTGAAATTGGAAGTTAAAGTTGAACAGGTTGCTGATTATGATAAAGAAGGTTCT CTTTTGCGTGTTCGCGGAAAGAATGTTTTAGAGAATGAACATGTCAAGATTGGAGCATTCCATACTTTAGAACTCGAGCT ACAGCGACCTTTTGTGCTCAGAAAGGATGTCTGGGATTCTCTGGCTCTGGAGGTACTCAAGCAGGCTTCTGATCCTGGTG CAAGTGCTGATCTAGCTGTTGTTTTGATGCAAGAAGGATTAGCTCATATCCTCCTTGTTGGTAGAAGTATGACTATTACT CGTTCGCGGATCGAAAGTTCAATTCCTCGTAAGCATGGGCCTGCTATAGCTGGTTATGAGAAAGCTTTGAATAAGTTCTT TGAGAATGTACTGCAGGCTTTCTTGAAACATGTGGATTTCAACGTCGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTA CGAAAGATCAGTTTCATCGTCACTTATTTTTGGAGGCAGAAAGAAGACAGCTGCGAACTATTATTGAAAACAAGTCACGC ATCCTTCTTGTGCACACGACCTCAGGATACAAGCATAGTTTAAGAGAGGTTCTGGATGCTCCAAATGTCATGAATTTGAT AAAAGATACAAAGGCAGCGCAAGAGGTTCGAGTTCTGCAGGACTTCTACAACATGCTTTCAAATGATTCAGCACGTGCTT GTTATGGAATGAAACATGTTGAGGTTGCTAATGAACGACTAGCTGTGCAGACTCTTCTAATTACAGATGAACTTTTCAGG AATTCGGATATAGCAGCAAGGAAAAAGTTTGTTAACTTGGTCAATTCAATTAAGGATTCAGGAGGCACCGTCCACGTATT TTCATCCATGCATGTCTCTGGAGAACGTAAAGCTAGCACAGATAAGTGGCATTGCTGCAATTCTTCGGTTTCCTCTCCCT GA
Protein sequence (LotjaGi5g1v0204100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIVRKDLVPNGPGSVKMVPVDPDDLWFAYNLIAPGDSVMAVTIRKVLREAANGGRDAERVKLKLEVKVEQVADYDKEGS LLRVRGKNVLENEHVKIGAFHTLELELQRPFVLRKDVWDSLALEVLKQASDPGASADLAVVLMQEGLAHILLVGRSMTIT RSRIESSIPRKHGPAIAGYEKALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLFLEAERRQLRTIIENKSR ILLVHTTSGYKHSLREVLDAPNVMNLIKDTKAAQEVRVLQDFYNMLSNDSARACYGMKHVEVANERLAVQTLLITDELFR NSDIAARKKFVNLVNSIKDSGGTVHVFSSMHVSGERKASTDKWHCCNSSVSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 356 | 356 | 4.5E-174 | ||
| Pfam | 1 | 129 | 129 | 7.5E-50 | ||
| SMART | 1 | 131 | 131 | 7.2E-47 | ||
| SUPERFAMILY | 1 | 131 | 131 | 6.67E-38 | ||
| Gene3D | 1 | 133 | 133 | 1.4E-42 | ||
| TIGRFAM | 2 | 356 | 355 | 3.1E-61 | ||
| SUPERFAMILY | 133 | 272 | 140 | 2.03E-47 | – | |
| Gene3D | 137 | 268 | 132 | 8.1E-53 | ||
| Pfam | 138 | 269 | 132 | 3.4E-30 | ||
| SUPERFAMILY | 265 | 356 | 92 | 1.59E-24 | ||
| Gene3D | 269 | 360 | 92 | 9.6E-34 | ||
| Pfam | 273 | 356 | 84 | 1.6E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nuclear-transcribed mRNA catabolic process, non-stop decay | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that is lacking a stop codon. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process, no-go decay | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation. | ||
| Biological process | RNA surveillance | The set of processes involved in identifying and degrading defective or aberrant RNAs. |
Expression pattern of LotjaGi5g1v0204100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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