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Lj0g3v0058969.1

Overview

Field Value
Gene ID Lj0g3v0058969
Transcript ID Lj0g3v0058969.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Fragaria vesca subsp]. vesca] gi|470128173|ref|XP_004300022.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 21 21 – –
Phobius
SIGNAL_PEPTIDE
1 42 42 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
22 30 9 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
31 42 12 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
43 566 524 – –
MobiDBLite
mobidb-lite
46 77 32 – –
PANTHER
PTHR11262
49 553 505 7.80E-285 –
PANTHER
PTHR11262:SF9
49 553 505 7.80E-285 –
MobiDBLite
mobidb-lite
154 182 29 – –
Gene3D
G3DSA:3.40.50.300
179 378 200 1.30E-45
IPR027417
SUPERFAMILY
SSF52540
180 525 346 3.17E-61
IPR027417
TIGRFAM
TIGR00382
180 536 357 6.60E-146
IPR004487
CDD
cd00009
234 341 108 9.39E-14 –
SMART
SM00382
236 389 154 8.50E-08
IPR003593
Pfam
PF07724
236 440 205 1.80E-43
IPR003959
Gene3D
G3DSA:3.40.50.300
424 440 17 1.30E-45
IPR027417
SMART
SM01086
447 536 90 6.40E-26
IPR019489
Pfam
PF10431
447 523 77 5.20E-13
IPR019489
Gene3D
G3DSA:1.10.8.60
447 537 91 1.30E-31 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0058969.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0058969.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.