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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0059929 |
| Transcript ID | Lj0g3v0059929.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 346 | 346 | 1.00E-146 | – | |
| PANTHER | 1 | 346 | 346 | 1.00E-146 | – | |
| ProSiteProfiles | 25 | 59 | 35 | 10.665 | ||
| Pfam | 26 | 70 | 45 | 8.00E-11 | ||
| TIGRFAM | 27 | 60 | 34 | 9.90E-07 | ||
| SUPERFAMILY | 28 | 178 | 151 | 7.78E-05 | ||
| Gene3D | 28 | 172 | 145 | 1.00E-04 | ||
| ProSiteProfiles | 60 | 94 | 35 | 9.471 | ||
| TIGRFAM | 62 | 96 | 35 | 1.40E-04 | ||
| Pfam | 85 | 142 | 58 | 7.60E-05 | ||
| ProSiteProfiles | 95 | 129 | 35 | 8.758 | ||
| TIGRFAM | 97 | 130 | 34 | 0.0021 | ||
| ProSiteProfiles | 130 | 164 | 35 | 10.797 | ||
| TIGRFAM | 132 | 165 | 34 | 8.80E-06 | ||
| Pfam | 153 | 211 | 59 | 4.20E-13 | ||
| ProSiteProfiles | 165 | 199 | 35 | 10.512 | ||
| TIGRFAM | 168 | 200 | 33 | 8.30E-05 | ||
| ProSiteProfiles | 200 | 234 | 35 | 8.67 | ||
| TIGRFAM | 202 | 233 | 32 | 0.002 | ||
| Pfam | 219 | 359 | 141 | 1.10E-09 | ||
| ProSiteProfiles | 235 | 269 | 35 | 9.361 | ||
| TIGRFAM | 239 | 271 | 33 | 4.30E-04 | ||
| Gene3D | 243 | 328 | 86 | 1.00E-04 | ||
| ProSiteProfiles | 271 | 305 | 35 | 11.027 | ||
| TIGRFAM | 274 | 307 | 34 | 1.20E-05 | ||
| ProSiteProfiles | 306 | 340 | 35 | 8.057 | ||
| PANTHER | 414 | 433 | 20 | 1.00E-146 | – | |
| PANTHER | 414 | 433 | 20 | 1.00E-146 | – | |
| SMART | 451 | 540 | 90 | 7.50E-08 | ||
| ProSiteProfiles | 454 | 530 | 77 | 12.963 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0059929.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0059929.1, powered by CORGI.
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