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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0059959 |
| Transcript ID | Lj0g3v0059959.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | – | – | |
| PANTHER | 13 | 30 | 18 | 1.90E-185 | – | |
| PANTHER | 13 | 30 | 18 | 1.90E-185 | – | |
| PANTHER | 58 | 496 | 439 | 1.90E-185 | – | |
| PANTHER | 58 | 496 | 439 | 1.90E-185 | – | |
| MobiDBLite | 70 | 91 | 22 | – | – | |
| Gene3D | 175 | 409 | 235 | 1.30E-11 | ||
| ProSiteProfiles | 175 | 209 | 35 | 10.326 | ||
| Pfam | 176 | 219 | 44 | 5.80E-09 | ||
| TIGRFAM | 178 | 210 | 33 | 5.10E-04 | ||
| SUPERFAMILY | 188 | 491 | 304 | 1.90E-10 | ||
| ProSiteProfiles | 210 | 244 | 35 | 8.605 | ||
| ProSiteProfiles | 245 | 279 | 35 | 7.432 | ||
| TIGRFAM | 251 | 280 | 30 | 0.0024 | ||
| Pfam | 251 | 273 | 23 | 0.033 | ||
| ProSiteProfiles | 280 | 314 | 35 | 10.457 | ||
| TIGRFAM | 282 | 315 | 34 | 4.80E-05 | ||
| Pfam | 282 | 311 | 30 | 8.80E-04 | ||
| Pfam | 314 | 363 | 50 | 3.50E-12 | ||
| ProSiteProfiles | 315 | 349 | 35 | 12.036 | ||
| TIGRFAM | 317 | 351 | 35 | 1.40E-08 | ||
| ProSiteProfiles | 350 | 384 | 35 | 10.95 | ||
| TIGRFAM | 353 | 381 | 29 | 7.20E-08 | ||
| Pfam | 368 | 509 | 142 | 1.50E-11 | ||
| ProSiteProfiles | 385 | 419 | 35 | 10.084 | ||
| TIGRFAM | 387 | 421 | 35 | 8.70E-06 | ||
| ProSiteProfiles | 421 | 455 | 35 | 12.408 | ||
| TIGRFAM | 423 | 457 | 35 | 5.10E-09 | ||
| Gene3D | 424 | 486 | 63 | 3.90E-06 | ||
| ProSiteProfiles | 456 | 490 | 35 | 9.778 | ||
| TIGRFAM | 461 | 491 | 31 | 1.60E-04 | ||
| Gene3D | 521 | 587 | 67 | 3.90E-06 | ||
| ProSiteProfiles | 557 | 591 | 35 | 5.503 | ||
| PANTHER | 563 | 582 | 20 | 1.90E-185 | – | |
| PANTHER | 563 | 582 | 20 | 1.90E-185 | – | |
| SMART | 600 | 690 | 91 | 1.30E-08 | ||
| ProSiteProfiles | 603 | 687 | 85 | 13.162 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0059959.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0059959.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.