Domain Predictions — View

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PS00866

Source: ProSitePatterns

Description

Carbamoyl-phosphate synthase subdomain signature 1.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0077959.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Carbamoyl-phosphate synthase large chain [Medicago truncatula] gi\|357453751\|ref\|XP_003597156.1\|	Domains G3DSA:1.10.1030.10 G3DSA:3.30.1490.20 G3DSA:3.30.470.20 G3DSA:3.40.50.1380 G3DSA:3.40.50.20 IPR005479 IPR005480 IPR005483 IPR006275 IPR011607 IPR011761 IPR013815 IPR013816 IPR016185 IPR033937 PF02142 PF02786 PF02787 PR00098 PS00866 PS00867 PS50975 PTHR11405 PTHR11405:SF47 SM00851 SM01096 SSF48108 SSF52335 SSF52440 SSF56059 TIGR01369 cd01424	32
Lj4g3v3015020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: biotin carboxylase 1, chloroplastic-like [Cicer arietinum] gi\|502138858\|ref\|XP_004503555.1\|	Domains G3DSA:3.30.1490.20 G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR004549 IPR005479 IPR005481 IPR005482 IPR011054 IPR011761 IPR011764 IPR013815 IPR013816 IPR016185 PF00289 PF02785 PF02786 PS00866 PS00867 PS50975 PS50979 PTHR18866 SM00878 SSF51246 SSF52440 SSF56059 TIGR00514	26
Lj5g3v1003320.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X2 [Cicer arietinum] gi\|502115337\|ref\|XP_004495179.1\|	Domains G3DSA:2.40.50.100 G3DSA:3.30.1490.20 G3DSA:3.30.470.20 G3DSA:3.40.50.20 IPR000089 IPR001882 IPR005479 IPR005481 IPR005482 IPR011053 IPR011054 IPR011761 IPR011764 IPR013815 IPR013816 IPR016185 PF00289 PF00364 PF02785 PF02786 PS00188 PS00866 PS00867 PS50968 PS50975 PS50979 PTHR18866 SM00878 SSF51230 SSF51246 SSF52440 SSF56059 cd06850	33
LotjaGi3g1v0161000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Carbamoyl-phosphate synthase large chain; TAIR: AT1G29900.1 carbamoyl phosphate synthetase B; Swiss-Prot: sp\|Q42601\|CARB_ARATH Carbamoyl-phosphate synthase large chain, chloroplastic; TrEMBL-Plants: tr\|G7IU57\|G7IU57_MEDTR Carbamoyl-phosphate synthase large chain; Found in the gene: LotjaGi3g1v0161000	Domains Coil G3DSA:1.10.1030.10 G3DSA:3.30.470.20 G3DSA:3.40.50.1380 G3DSA:3.40.50.20 IPR005479 IPR005480 IPR005483 IPR006275 IPR011607 IPR011761 IPR016185 IPR033937 IPR036897 IPR036914 MF_01210_A MF_01210_B PF02142 PF02786 PF02787 PR00098 PS00866 PS00867 PS50975 PS51855 PTHR11405 PTHR11405:SF5 SM00851 SM01096 SSF48108 SSF52335 SSF52440 SSF56059 TIGR01369 cd01424 mobidb-lite	36
LotjaGi4g1v0439600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Biotin carboxylase; TAIR: AT5G35360.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit; Swiss-Prot: sp\|B9HBA8\|ACCC1_POPTR Biotin carboxylase 1, chloroplastic; TrEMBL-Plants: tr\|O23960\|O23960_SOYBN Acetyl-CoA carboxylase; Found in the gene: LotjaGi4g1v0439600	Domains G3DSA:3.30.470.130 IPR004549 IPR005479 IPR005481 IPR005482 IPR011054 IPR011761 IPR011764 IPR016185 PF00289 PF02785 PF02786 PS00866 PS00867 PS50975 PS50979 PTHR42761 PTHR42761:SF7 SM00878 SSF51246 SSF52440 SSF56059 TIGR00514	23
LotjaGi4g1v0439600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Biotin carboxylase; TAIR: AT5G35360.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit; Swiss-Prot: sp\|B9HBA8\|ACCC1_POPTR Biotin carboxylase 1, chloroplastic; TrEMBL-Plants: tr\|O23960\|O23960_SOYBN Acetyl-CoA carboxylase; Found in the gene: LotjaGi4g1v0439600	Domains G3DSA:3.30.470.130 IPR004549 IPR005479 IPR005481 IPR005482 IPR011054 IPR011761 IPR011764 IPR016185 PF00289 PF02785 PF02786 PS00866 PS00867 PS50975 PS50979 PTHR42761 PTHR42761:SF7 SM00878 SSF51246 SSF52440 SSF56059 TIGR00514	23
LotjaGi5g1v0170200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acetyl-CoA carboxylase, putative; TAIR: AT1G03090.2 methylcrotonyl-CoA carboxylase alpha chain; Swiss-Prot: sp\|Q42777\|MCCA_SOYBN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; TrEMBL-Plants: tr\|A0A151QXF8\|A0A151QXF8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0170200	Domains G3DSA:2.40.50.100 G3DSA:3.30.470.130 IPR000089 IPR001882 IPR005479 IPR005481 IPR005482 IPR011053 IPR011054 IPR011761 IPR011764 IPR016185 PF00289 PF00364 PF02785 PF02786 PS00188 PS00866 PS00867 PS50968 PS50975 PS50979 PTHR18866 PTHR18866:SF33 SM00878 SSF51230 SSF51246 SSF52440 SSF56059 cd06850	30

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd06850	CDD	1	14.29