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Lj0g3v0250239.1

Overview

Field Value
Gene ID Lj0g3v0250239
Transcript ID Lj0g3v0250239.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Fragaria vesca subsp]. vesca] gi|470142342|ref|XP_004306870.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
95 119 25 – –
Coils
Coil
122 142 21 – –
MobiDBLite
mobidb-lite
131 261 131 – –
SMART
SM00316
262 333 72 2.70E-16
IPR022967
SUPERFAMILY
SSF50249
263 340 78 2.01E-14
IPR012340
ProSiteProfiles
PS50126
264 333 70 16.624
IPR003029
CDD
cd05684
264 340 77 7.04E-34 –
Pfam
PF00575
265 326 62 7.00E-13
IPR003029
Gene3D
G3DSA:2.40.50.140
265 343 79 4.90E-17 –
PANTHER
PTHR18934:SF120
324 1216 893 0 –
PANTHER
PTHR18934
324 1216 893 0 –
MobiDBLite
mobidb-lite
341 370 30 – –
Coils
Coil
475 495 21 – –
SUPERFAMILY
SSF52540
554 1087 534 5.11E-133
IPR027417
SMART
SM00487
562 746 185 1.20E-32
IPR014001
Gene3D
G3DSA:3.40.50.300
563 721 159 7.40E-55
IPR027417
Pfam
PF00270
570 720 151 2.30E-07
IPR011545
ProSiteProfiles
PS51192
574 737 164 19.821
IPR014001
CDD
cd00046
583 719 137 2.59E-32 –
ProSitePatterns
PS00690
679 688 10 –
IPR002464
CDD
cd00079
744 901 158 1.46E-13 –
Gene3D
G3DSA:3.40.50.300
760 905 146 3.50E-12
IPR027417
ProSiteProfiles
PS51194
762 935 174 17.276
IPR001650
Pfam
PF00271
764 894 131 1.40E-12
IPR001650
SMART
SM00490
790 894 105 1.40E-18
IPR001650
SMART
SM00847
955 1045 91 2.10E-41
IPR007502
Pfam
PF04408
956 1044 89 7.40E-26
IPR007502
Pfam
PF07717
1076 1177 102 2.30E-25
IPR011709

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0250239.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0250239.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.