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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0258519 |
| Transcript ID | Lj0g3v0258519.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502615|ref|XP_003621596.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 52 | 52 | – | – | |
| PANTHER | 174 | 575 | 402 | 1.10E-215 | – | |
| PANTHER | 174 | 575 | 402 | 1.10E-215 | – | |
| Gene3D | 181 | 292 | 112 | 8.10E-10 | ||
| ProSiteProfiles | 209 | 243 | 35 | 6.04 | ||
| Pfam | 214 | 234 | 21 | 0.29 | ||
| ProSiteProfiles | 244 | 278 | 35 | 12.145 | ||
| Pfam | 244 | 289 | 46 | 1.00E-10 | ||
| TIGRFAM | 246 | 279 | 34 | 7.50E-09 | ||
| SUPERFAMILY | 246 | 271 | 26 | 2.60E-05 | ||
| ProSiteProfiles | 279 | 314 | 36 | 10.95 | ||
| TIGRFAM | 281 | 315 | 35 | 0.003 | ||
| ProSiteProfiles | 315 | 349 | 35 | 11.323 | ||
| Pfam | 317 | 347 | 31 | 6.30E-07 | ||
| ProSiteProfiles | 350 | 384 | 35 | 11.827 | ||
| Pfam | 350 | 398 | 49 | 1.00E-13 | ||
| TIGRFAM | 352 | 382 | 31 | 3.30E-06 | ||
| ProSiteProfiles | 385 | 419 | 35 | 12.145 | ||
| TIGRFAM | 387 | 414 | 28 | 9.90E-09 | ||
| Gene3D | 388 | 519 | 132 | 8.10E-10 | ||
| SUPERFAMILY | 413 | 554 | 142 | 2.60E-05 | ||
| ProSiteProfiles | 420 | 454 | 35 | 11.038 | ||
| TIGRFAM | 422 | 455 | 34 | 2.20E-07 | ||
| Pfam | 422 | 452 | 31 | 3.40E-07 | ||
| Pfam | 455 | 501 | 47 | 2.50E-15 | ||
| ProSiteProfiles | 455 | 489 | 35 | 13.088 | ||
| TIGRFAM | 457 | 491 | 35 | 8.70E-09 | ||
| ProSiteProfiles | 490 | 524 | 35 | 10.293 | ||
| TIGRFAM | 493 | 525 | 33 | 7.60E-06 | ||
| ProSiteProfiles | 525 | 559 | 35 | 12.408 | ||
| Pfam | 525 | 571 | 47 | 1.20E-13 | ||
| TIGRFAM | 529 | 561 | 33 | 4.20E-07 | ||
| ProSiteProfiles | 560 | 594 | 35 | 7.454 | ||
| PANTHER | 640 | 670 | 31 | 1.10E-215 | – | |
| PANTHER | 640 | 670 | 31 | 1.10E-215 | – | |
| Pfam | 646 | 670 | 25 | 9.10E-05 | ||
| ProSiteProfiles | 659 | 693 | 35 | 8.089 | ||
| PANTHER | 704 | 751 | 48 | 1.10E-215 | – | |
| PANTHER | 704 | 751 | 48 | 1.10E-215 | – | |
| SMART | 766 | 858 | 93 | 1.30E-17 | ||
| SUPERFAMILY | 767 | 847 | 81 | 4.84E-07 | ||
| ProSiteProfiles | 769 | 858 | 90 | 19.159 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0258519.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0258519.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.