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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0285989 |
| Transcript ID | Lj0g3v0285989.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ABC transporter B family member [Medicago truncatula] gi|357463203|ref|XP_003601883.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 660 | 660 | 0 | – | |
| PANTHER | 1 | 660 | 660 | 0 | – | |
| Phobius | 1 | 92 | 92 | – | – | |
| SUPERFAMILY | 81 | 400 | 320 | 6.54E-52 | ||
| Gene3D | 81 | 401 | 321 | 1.20E-45 | – | |
| Phobius | 93 | 113 | 21 | – | – | |
| ProSiteProfiles | 94 | 381 | 288 | 39.433 | ||
| TMHMM | 94 | 116 | 23 | – | – | |
| Pfam | 95 | 361 | 267 | 1.30E-43 | ||
| Phobius | 114 | 132 | 19 | – | – | |
| TMHMM | 131 | 153 | 23 | – | – | |
| Phobius | 133 | 153 | 21 | – | – | |
| Phobius | 154 | 213 | 60 | – | – | |
| Phobius | 214 | 233 | 20 | – | – | |
| TMHMM | 214 | 236 | 23 | – | – | |
| Phobius | 234 | 238 | 5 | – | – | |
| Phobius | 239 | 259 | 21 | – | – | |
| TMHMM | 240 | 259 | 20 | – | – | |
| Coils | 260 | 280 | 21 | – | – | |
| Phobius | 260 | 316 | 57 | – | – | |
| Phobius | 317 | 340 | 24 | – | – | |
| TMHMM | 317 | 339 | 23 | – | – | |
| Phobius | 341 | 661 | 321 | – | – | |
| SUPERFAMILY | 408 | 656 | 249 | 2.07E-91 | ||
| Gene3D | 416 | 642 | 227 | 7.00E-86 | ||
| ProSiteProfiles | 417 | 653 | 237 | 25.377 | ||
| CDD | 417 | 656 | 240 | 5.17E-141 | – | |
| Pfam | 435 | 584 | 150 | 2.20E-36 | ||
| SMART | 444 | 637 | 194 | 2.10E-15 | ||
| ProSitePatterns | 556 | 570 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0285989.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0285989.1, powered by CORGI.
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